PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G131961_P01 | ||||||||
Common Name | LOC100502433 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bZIP | ||||||||
Protein Properties | Length: 405aa MW: 45339.8 Da PI: 7.8623 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 29.8 | 1.3e-09 | 115 | 143 | 6 | 34 |
HHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLeek 34 + rr+++NReAAr+sR+RKka+i++Le+ GRMZM2G131961_P01 115 VMRRLAQNREAARKSRLRKKAYIQQLETS 143 679***********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 5.2E-4 | 109 | 170 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.2E-6 | 116 | 147 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.97E-6 | 116 | 156 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 117 | 132 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 6.0E-7 | 117 | 157 | No hit | No description |
Pfam | PF14144 | 4.0E-28 | 201 | 277 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MMELYSGYLE DHFNLHKLSS ASPPQYMTPA ASPAQFAPAP LRMGYGRPAP VMGMWSSEPF 60 KVDSGGHATC SASTVMEADT KLETSRLQDV PQVALEPERS TDQETSRPPE RVRTVMRRLA 120 QNREAARKSR LRKKAYIQQL ETSRMKLAQL ELELQRARRQ QGAYANGSMG DPALGYTGSI 180 DPGVAAFEIE YRHWVDEQKR HTAELMSALQ GQQTSELELR LLVETGLSNY EHLFRIKALA 240 ANADVFHVMS GVWKTPAERF FLWIGGFRPS EVLKILSPQL EPLAEAQRML VGGLQHTSTQ 300 AEDALSQGME KLQQNLAEIL TAEADPFGAP DAYMLQMATA VEKLKELVNF VTQADHLRLM 360 TLQQMHKILT TRQAARGLLA LGDYFQRLRT LSSLWAARPR EAAIS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.97427 | 0.0 | aerial organ| ovary |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G131961 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00586 | DAP | Transfer from AT5G65210 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G131961_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT088145 | 0.0 | BT088145.1 Zea mays full-length cDNA clone ZM_BFc0036D12 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008668574.1 | 0.0 | putative bZIP transcription factor superfamily protein isoform X1 | ||||
Swissprot | A0A0P0WFC8 | 0.0 | TGAL6_ORYSJ; Transcription factor TGAL6 | ||||
TrEMBL | C4JBE8 | 0.0 | C4JBE8_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G131961_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3571 | 38 | 77 | Representative plant | OGRP2679 | 11 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65210.5 | 1e-122 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G131961_P01 |
Entrez Gene | 100502433 |