PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G130442_P02
Common NameZEAMMB73_171983, Zm.95348
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HD-ZIP
Protein Properties Length: 785aa    MW: 85013.8 Da    PI: 6.2412
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G130442_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-2094150157
                        TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
           Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                        +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k+
  GRMZM2G130442_P02  94 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 150
                        688999************************************************995 PP
2START194.74.2e-612965181206
                        HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-SE CS
              START   1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke...qWdetlak 78 
                        ela +a++el+++a  ++ +W   +      ++++++e++++f+ + +      + ea+r+s+vv+m++  l e+l+d ++    ++  + +
  GRMZM2G130442_P02 296 ELAVAAMDELLRMARPDALLWGGGAsagaqqQQLDEEEYVRTFPAGLGprqygLRPEASRDSAVVIMTCDSLIEILMDANRfaaVFSSIVSR 387
                        57899****************9988889***************8877799999999************************88888888888* PP

                        EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS
              START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163
                        a+t+ev+s+g      galq+m++e+q++splvp R+++fvRy++  ++g+w++vdvS+ds ++ p    v++++++pSg+li++++ng+sk
  GRMZM2G130442_P02 388 ASTHEVLSTGvagsynGALQVMSMEFQVPSPLVPtRESYFVRYCKNNPDGTWAVVDVSLDSLRPSP----VIKCRRRPSGCLIQEMPNGYSK 475
                        ****************************************************************98....7********************* PP

                        EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
              START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                        vtwvehv++++r++h+l+r+lv+sgla+gak+wv tl+rqce+
  GRMZM2G130442_P02 476 VTWVEHVEVDDRSVHNLYRPLVNSGLAFGAKRWVGTLDRQCER 518
                        *****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-2376149IPR009057Homeodomain-like
SuperFamilySSF466891.09E-1981151IPR009057Homeodomain-like
PROSITE profilePS5007117.02291151IPR001356Homeobox domain
SMARTSM003896.3E-2092155IPR001356Homeobox domain
CDDcd000861.48E-1994152No hitNo description
PfamPF000464.3E-1894149IPR001356Homeobox domain
PROSITE patternPS000270126149IPR017970Homeobox, conserved site
PROSITE profilePS5084838.252287521IPR002913START domain
SuperFamilySSF559617.14E-32288520No hitNo description
CDDcd088753.51E-114291517No hitNo description
SMARTSM002343.2E-56296518IPR002913START domain
PfamPF018526.6E-51297518IPR002913START domain
Gene3DG3DSA:3.30.530.207.8E-7358517IPR023393START-like domain
SuperFamilySSF559612.47E-24540774No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 785 aa     Download sequence    Send to blast
MRYHQRFAGR RRRHRQGSKA DLLDSHQLQQ AFQQQLFDQI PTTTTVDDSS DNLIHGRSDT  60
LVDEFESKSC SENPDGTSGD DGLEEDPNQR PNKKKRYHRH TQHQIQEMEA FFKECPHPDD  120
KQRKELSREL GLEPLQVKFW FQNKRTQMKN QHERHENAQL RAENDKLRAE NMRYKEALGT  180
ASCPSCGGPA ALGEMSFDEH HLRLENARLR DEIDRISGIA AKHVGKPMVS FPVLSSPLAA  240
AAAAARSPLD LAGAYGVQSA AAGLGADHVL FGAGAGDLLR SVSAGQLDAD KPMIVELAVA  300
AMDELLRMAR PDALLWGGGA SAGAQQQQLD EEEYVRTFPA GLGPRQYGLR PEASRDSAVV  360
IMTCDSLIEI LMDANRFAAV FSSIVSRAST HEVLSTGVAG SYNGALQVMS MEFQVPSPLV  420
PTRESYFVRY CKNNPDGTWA VVDVSLDSLR PSPVIKCRRR PSGCLIQEMP NGYSKVTWVE  480
HVEVDDRSVH NLYRPLVNSG LAFGAKRWVG TLDRQCERLA SAMASNIPNG DLGVITSIEG  540
RKSMLKLAER MVASFCGGVT ASAAHQWTTL SGSGAEDVRV MTRKSVDDPG RPPGIVLNAA  600
TSFWLPVPPK RVFDFLRDET SRSEWDILSN GGAVQEMAHI ANGRDHGNCV SLLRVNSANS  660
NQSNMLILQE SCTDASGSYV VYAPVDVVAM NVVLNGGDPD YVALLPSGFA ILPDGPPPAG  720
AAPSHGEGLD TGGGGSLLTV AFQILVDSVP TAKLSLGSVA TVNSLIACTV ERIKAAVCAE  780
AGNPQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1815GRRRRHRQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.953480.0ear| embryo| endosperm| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G130442
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Specifically expressed in the L1-layer of the meristem and protoderm (epidermis) of leaf primordia. During leaf development, expressed in protoderm from plastochron 1 (P1) to P4 and down-regulated at P5 to then disappear. Expressed in the epidermis of primary rachis branch, and in the protoderm of secondary rachis branch primordia. Expressed similarly in L1-layer or protoderm in young and developed floral shoots. During embryogenesis, expressed in the outermost (epidermal) cells 2 days after pollination (DAP) and later at 4 DAP in protodermal cells without any organ differentiation. In nearly mature embryo, strongly expressed in protoderm in the shoot apical meristem (SAM) and lateral organ primordia. {ECO:0000269|PubMed:11846882}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269|PubMed:11846882}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G130442_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0663760.0BT066376.1 Zea mays full-length cDNA clone ZM_BFc0032A06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020407343.10.0outer cell layer5a isoform X1
SwissprotQ6ZAR00.0ROC1_ORYSJ; Homeobox-leucine zipper protein ROC1
TrEMBLK7TT240.0K7TT24_MAIZE; Homeobox-leucine zipper protein MERISTEM L1
STRINGGRMZM2G130442_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lee JH, et al.
    Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases.
    Plant Cell, 2008. 20(1): p. 152-67
    [PMID:18223036]
  2. Yi J, et al.
    OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa.
    J. Exp. Bot., 2016. 67(8): p. 2425-37
    [PMID:26912801]
  3. Dou M,Cheng S,Zhao B,Xuan Y,Shao M
    The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice.
    Int J Mol Sci, 2016. 17(3): p. 233
    [PMID:26927068]
  4. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]