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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G130149_P04 | ||||||||
Common Name | pco132275a | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB | ||||||||
Protein Properties | Length: 245aa MW: 28095.8 Da PI: 8.5764 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.5 | 2.6e-17 | 10 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +g+WT++Ed++lv+ v+++G ++W+ Ia+ g ++Rt+k+c++rw +yl GRMZM2G130149_P04 10 KGPWTEQEDLQLVCTVRLFGERRWDFIAKVSGlrgLNRTGKSCRLRWVNYL 60 79***********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.7 | 2.3e-17 | 66 | 111 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr+++ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++ GRMZM2G130149_P04 66 RGRMSPHEERLILELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 111 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.608 | 5 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.94E-29 | 9 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-15 | 9 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-16 | 10 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-19 | 11 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.98E-11 | 12 | 60 | No hit | No description |
PROSITE profile | PS51294 | 25.552 | 61 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-16 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-15 | 66 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.33E-12 | 68 | 111 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.9E-24 | 68 | 114 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MVTVREETRK GPWTEQEDLQ LVCTVRLFGE RRWDFIAKVS GLRGLNRTGK SCRLRWVNYL 60 HPGLKRGRMS PHEERLILEL HARWGNRWSR IARRLPGRTD NEIKNYWRTH MRKKAQERKR 120 NMSPSSSSSS LTYQSGYPDT PSTIGVEGQE LHGGSGCITS ILKGTPPDMD GYPMDQIWME 180 IEAPQMPSEE SFVGGNHNVC SSLATPLPPP TVWEYYPDAC WKVDDEIKMA TQFQFGYSEG 240 VGPCF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 7e-28 | 7 | 115 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 7e-28 | 10 | 115 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 7e-28 | 10 | 115 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.12696 | 0.0 | aerial organ| ear| embryo| endosperm| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G130149 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G130149_P04 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT087286 | 0.0 | BT087286.1 Zea mays full-length cDNA clone ZM_BFb0029N14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008664593.1 | 1e-174 | uncharacterized protein LOC100194394 isoform X1 | ||||
Swissprot | Q4JL76 | 1e-124 | MYBA2_ORYSJ; Myb-related protein MYBAS2 | ||||
TrEMBL | A0A317YJF8 | 1e-173 | A0A317YJF8_MAIZE; Myb-related protein MYBAS2 | ||||
TrEMBL | C4J8Y9 | 1e-173 | C4J8Y9_MAIZE; MYB transcription factor | ||||
STRING | GRMZM2G130149_P04 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 3e-74 | myb domain protein 59 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G130149_P04 |
Publications ? help Back to Top | |||
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