PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G122897_P01 | ||||||||
Common Name | HDZIV8_OCL8, ZEAMMB73_395029, Zm.37420 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 742aa MW: 79524.9 Da PI: 5.2591 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.8 | 5.7e-21 | 45 | 101 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++ +++t++q++eLe++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k+ GRMZM2G122897_P01 45 KKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 101 688999************************************************995 PP | |||||||
2 | START | 200.2 | 9e-63 | 250 | 474 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS..........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT CS START 1 elaeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv.........dsgealrasgvvdmvlallveellddkeqWdet 75 ela +a++elv++a+++ep+W + e +n++e+ + f ++ea+r+s+vv+m++a+lve+l+d++ q+ GRMZM2G122897_P01 250 ELAVAAMEELVRMAQLDEPLWNAPAgldgsaeeETLNEEEYARLF----PgglgpkpygLNSEASRDSAVVIMTHANLVEILMDVN-QYAAV 336 57899******************99**666665566666666666....04457********************************.66666 PP -S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEE CS START 76 la....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliep 156 + +a+tlev+s+g galq+m+ e+q++splvp R+++fvRy++q +g+w++vdvS+d ++ v +++++pSg+li++ GRMZM2G122897_P01 337 FSsivsRAATLEVLSTGvagnynGALQVMSVEFQVPSPLVPtRESYFVRYCKQNADGTWAVVDVSLDGLRPGA----VLKCRRRPSGCLIQE 424 655555*****************************************************************98....8************** PP ECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 157 ksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++ng+skvtwvehv++++r++h++++ lv+sgla+ga++wv tl+rqce+ GRMZM2G122897_P01 425 MPNGYSKVTWVEHVEVDDRSVHSIYKLLVSSGLAFGARRWVGTLDRQCER 474 ************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-23 | 23 | 100 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.22E-20 | 28 | 102 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.216 | 42 | 102 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.9E-20 | 43 | 106 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.4E-18 | 45 | 100 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.18E-20 | 45 | 103 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 77 | 100 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 41.241 | 241 | 477 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.92E-34 | 242 | 476 | No hit | No description |
CDD | cd08875 | 4.01E-115 | 245 | 473 | No hit | No description |
SMART | SM00234 | 5.3E-58 | 250 | 474 | IPR002913 | START domain |
Pfam | PF01852 | 8.8E-53 | 251 | 474 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 5.7E-5 | 314 | 443 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.81E-23 | 495 | 729 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 742 aa Download sequence Send to blast |
MGRGGGGVSD PLLGDEFESK SGSENVDGGV SVDELQDPNQ RPSKKKRYHR HTQHQIQELE 60 AFFKECPHPD DKQRKELSRE LGLEPLQVKF WFQNKRTQMK NHHERQENSQ LRSENEKLRA 120 ENMRYKEALS SASCPSCGGP AALGEMSFDE HHLRVENARL REEVDRISSI AAKYVGRPMV 180 PFPVLSSPLA GAGARAPALP PLDMAPPYGA AADMFGGGGV VAAAGAAGAG DLLLRGAAVQ 240 SDADKPMIVE LAVAAMEELV RMAQLDEPLW NAPAGLDGSA EEETLNEEEY ARLFPGGLGP 300 KPYGLNSEAS RDSAVVIMTH ANLVEILMDV NQYAAVFSSI VSRAATLEVL STGVAGNYNG 360 ALQVMSVEFQ VPSPLVPTRE SYFVRYCKQN ADGTWAVVDV SLDGLRPGAV LKCRRRPSGC 420 LIQEMPNGYS KVTWVEHVEV DDRSVHSIYK LLVSSGLAFG ARRWVGTLDR QCERLASVMA 480 SNIPTSDIGV ITSAEGRKSM LKLAERMVMS FCGGVTASAA HQWTTLSGSG AEDVRVMTRK 540 SVDDPGRPPG IVLNAATSFW LPVPPKRVFD FLRDESSRSE WDILSNGGVV QEMAHIANGR 600 DHGNCVSLLR VNSTNSNQSS MLILQESCTD MSGSYVIYAP VDVVAMNVVL NGGDPDYVAL 660 LPSGFAILPD GPSSGSSSML QGDGGVGSGG SLLTVAFQIL VDSVPTAKIS LGSVATVNSL 720 IACTVERIKA AVISGQSNPQ QQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.37420 | 0.0 | ear| meristem| ovary| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G122897 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G122897_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT067259 | 0.0 | BT067259.1 Zea mays full-length cDNA clone ZM_BFb0357I11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001334663.1 | 0.0 | uncharacterized protein LOC100383453 | ||||
Swissprot | Q0J9X2 | 0.0 | ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2 | ||||
TrEMBL | A0A1D6JEZ1 | 0.0 | A0A1D6JEZ1_MAIZE; Homeodomain leucine zipper family IV protein | ||||
STRING | GRMZM2G122897_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP799 | 38 | 147 |
Representative plant | OGRP145 | 15 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05230.4 | 0.0 | homeodomain GLABROUS 2 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G122897_P01 |
Publications ? help Back to Top | |||
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