PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G121487_P01 | ||||||||
Common Name | LOC100284737 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | LBD | ||||||||
Protein Properties | Length: 278aa MW: 28814.7 Da PI: 8.3466 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.8 | 4.9e-40 | 44 | 140 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +Ca+Ck+lrrkC++dC++apyfp ++ kfa+vh++FG+snv+k+l++l++ +r+ a++slvyeAe+r+rdP+yG+vgv++ lq++l +lk+ GRMZM2G121487_P01 44 PCAGCKYLRRKCQPDCIFAPYFPPDNLDKFAYVHRVFGTSNVIKILNNLQPYQRQYAVNSLVYEAEMRIRDPIYGCVGVVSMLQHRLIRLKK 135 7*****************************************************************************************99 PP DUF260 93 elall 97 l+++ GRMZM2G121487_P01 136 ALESA 140 98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.096 | 43 | 144 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.2E-40 | 44 | 139 | IPR004883 | Lateral organ boundaries, LOB |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0004006 | anatomy | mesophyll cell | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0025589 | anatomy | leaf lamina tip | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MADPSASSVP PVVTMGSVVT VASPPTGGGS TVSAGITGGG KGGPCAGCKY LRRKCQPDCI 60 FAPYFPPDNL DKFAYVHRVF GTSNVIKILN NLQPYQRQYA VNSLVYEAEM RIRDPIYGCV 120 GVVSMLQHRL IRLKKALESA SLELSNYQAA EAAAASVAVG PHGVAAAGMA DFVGNAVPNC 180 TQNIINAGYS TMASITGAGP FMQQDNFASV QMLAMSFEGE NGAAARVGMN GGGGYGFAYS 240 PAMGVGHGVV SGHVQQQQIN GGQFLKNSTT GGDYRPTM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-47 | 34 | 151 | 1 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-47 | 34 | 151 | 1 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.58538 | 0.0 | shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G121487 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: In embryo sac, detected as early as the one-nucleus stage. In older embryo sacs, highest expression in antipodal cells. {ECO:0000269|PubMed:17209126}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves, leaf primordia, immature ears, immature tassels, whole ovules, silk and husk leaves. Found on the adaxial side of organs. {ECO:0000269|PubMed:17209126}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269|PubMed:17209126}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G121487_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU969518 | 0.0 | EU969518.1 Zea mays clone 331388 ASYMMETRIC LEAVES2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001151104.1 | 0.0 | ASYMMETRIC LEAVES2 | ||||
Swissprot | Q32SG3 | 6e-78 | LBD6_MAIZE; LOB domain-containing protein 6 | ||||
TrEMBL | A0A1D6M4G5 | 0.0 | A0A1D6M4G5_MAIZE; Putative LOB domain-containing family protein | ||||
STRING | GRMZM2G121487_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2267 | 38 | 95 |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63090.4 | 2e-44 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G121487_P01 |
Entrez Gene | 100284737 |
Publications ? help Back to Top | |||
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