 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
GRMZM2G119999_P01 |
| Common Name | HB127, LOC100273913 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 294aa MW: 32254.2 Da PI: 4.5669 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GRMZM2G119999_P01 | genome | MaizeSequence | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 59.2 | 6.6e-19 | 71 | 124 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++ ++q+++Le+ Fe +++++ e+++++A+ l+L rqV vWFqNrRa++k
GRMZM2G119999_P01 71 KKRRLAADQVRALERSFEVDNKLDPERKARIARDLSLHPRQVAVWFQNRRARWK 124
4557899**********************************************9 PP
|
| 2 | HD-ZIP_I/II | 124.4 | 5.4e-40 | 70 | 162 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
ekkrrl+++qv++LE+sFe ++kL+perK+++ar+L l+prqvavWFqnrRAR+ktkq+E+d++aL+ ++dal+ e ++L++++++L++e+k
GRMZM2G119999_P01 70 EKKRRLAADQVRALERSFEVDNKLDPERKARIARDLSLHPRQVAVWFQNRRARWKTKQIERDFAALRVRHDALRVECDALRRDKDALAAEIK 161
69***************************************************************************************998 PP
HD-ZIP_I/II 93 e 93
e
GRMZM2G119999_P01 162 E 162
7 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 294 aa
Download sequence Send
to blast |
MKRPTSRGSS MVSGQATTDL QEDSCRSMEP HGVDGDATAA AERDDVDAGA YDEEVDEEEE 60
LAGSRGGLGE KKRRLAADQV RALERSFEVD NKLDPERKAR IARDLSLHPR QVAVWFQNRR 120
ARWKTKQIER DFAALRVRHD ALRVECDALR RDKDALAAEI KELRGMVEKQ MEVKLESAAE 180
ELLPVATRSA AAAAVYNKDG STDSDSSAVF NEEASPYPYS GAALDHQQQQ ETSHPLGFTG 240
FTSFLTSSFP SVYHGDSHLD QEADGFFSAA AAGDGFFAEE QSAGIGSWYG GEGW
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 118 | 126 | RRARWKTKQ |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf blades and panicles. {ECO:0000269|PubMed:17999151}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT042027 | 0.0 | BT042027.1 Zea mays full-length cDNA clone ZM_BFb0113G23 mRNA, complete cds. |
