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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM2G118884_P01 |
Common Name | LOC103626448, Zm.136812 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
DBB |
Protein Properties |
Length: 308aa MW: 31873.5 Da PI: 4.5415 |
Description |
DBB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G118884_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 19.4 | 2.2e-06 | 2 | 46 | 3 | 41 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
++ C+ + ++ C ++ lC C H+ H+++p
GRMZM2G118884_P01 2 QMLCDVCAAAPAAVICCADEAALCSACDRRVHRAnklahkHRRIP 46
589*****************************7799996666665 PP
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2 | zf-B_box | 25.4 | 2.9e-08 | 60 | 101 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
++ C+ ++e + fC +++ lC+dC + +H+ Ht
GRMZM2G118884_P01 60 KPLCDVCKERRGLVFCVEDRAILCPDCDDPIHSAndltakHT 101
689*****************************6577777776 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 308 aa
Download sequence Send
to blast |
MQMLCDVCAA APAAVICCAD EAALCSACDR RVHRANKLAH KHRRIPLAQP SGDESDADAK 60 PLCDVCKERR GLVFCVEDRA ILCPDCDDPI HSANDLTAKH TRFLLVGAKL SAALVDAQAP 120 HSPDDDDNDC GRGNGAAAEP DAVPAVCAQG SCAAKASSLE SGGGGGGGSG SGSSISEYLT 180 NICPGWRVDD LLFDDSAFSA ASKADSCDDG HEQVPSLDAD LFDVVAGAGW PGKRGSAWSG 240 VGALGFDKVP ASVVVVPTAA KQQQGCVRER TWDSDSDSDV FAVPELPQPP QAKKARPAPA 300 PAPTFWCF
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT038450 | 1e-122 | BT038450.1 Zea mays full-length cDNA clone ZM_BFb0234M06 mRNA, complete cds. |
GenBank | EU968073 | 1e-122 | EU968073.1 Zea mays clone 313792 salt tolerance-like protein mRNA, complete cds. |
GenBank | HQ858776 | 1e-122 | HQ858776.1 Zea mays clone UT1762 ORPHAN transcription factor mRNA, partial cds. |