PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G118047_P01
Common NameLOC101202695, ZEAMMB73_566713, Zm.2008
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HSF
Protein Properties Length: 267aa    MW: 28328.8 Da    PI: 7.8903
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G118047_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.15.8e-33131052103
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        F+ k+y+++ed+ +  +i w + +nsfvv d+  f++++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+h sF +g+++l
  GRMZM2G118047_P01  13 FVWKTYTMVEDPGTAGVIGWGSGNNSFVVADPFVFSQTLLPAHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFAHASFLRGQTHL 95 
                        9****************************************************************999.........*************** PP

                        XXXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkkse 103
                        l++i r+ s+
  GRMZM2G118047_P01  96 LRNIVRRGSS 105
                        ******9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.3E-379102IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.35E-339102IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-509102IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.6E-2813102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-161336IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-165163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-166476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MAAGGGGGSP APFVWKTYTM VEDPGTAGVI GWGSGNNSFV VADPFVFSQT LLPAHFKHNN  60
FSSFVRQLNT YGFRKVDPDR WEFAHASFLR GQTHLLRNIV RRGSSAAGAG GGKRKDASPT  120
ELASGDDMTM VATEVVRLKQ EQRAIDDRVA SMWRRVQETE RRPKQMLAFL LKVVGDRDRL  180
HRLVGDAPVP DNGFASGGAA EPPAAEVGEK RARLLLDGDS MVALGPEAVD FAGFYSGGGA  240
FGDVAVDAAA GSRGGGFSFA FGVDAGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A8e-25410712125Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.989680.0root| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G118047
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G118047_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0860240.0BT086024.2 Zea mays full-length cDNA clone ZM_BFc0101E17 mRNA, complete cds.
GenBankBT0881380.0BT088138.2 Zea mays full-length cDNA clone ZM_BFc0032K08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001266312.20.0heat shock factor protein 3
SwissprotQ0DBL61e-119HFC2B_ORYSJ; Heat stress transcription factor C-2b
TrEMBLA0A3L6DHS70.0A0A3L6DHS7_MAIZE; Heat stress transcription factor C-2b
TrEMBLK0DG800.0K0DG80_MAIZE; HSF28 HSF type transcription factor (Fragment)
TrEMBLK7V9Y40.0K7V9Y4_MAIZE; HSF28 HSF type transcription factor
STRINGGRMZM2G118047_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.18e-58heat shock transcription factor C1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]