PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G117193_P02
Common NameGLK6, Zm.19190
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 294aa    MW: 31203.9 Da    PI: 4.9999
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G117193_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.44.4e-301871255
            G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                       +rlrWt +LH rFv av+qLGG++kAtPk+++++m v gLtl+h+kSHLQ+YRl
  GRMZM2G117193_P02 18 ARLRWTRQLHGRFVLAVAQLGGADKATPKSVMRAMAVSGLTLYHLKSHLQRYRL 71
                       7****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-311575IPR009057Homeodomain-like
SuperFamilySSF466894.48E-141773IPR009057Homeodomain-like
TIGRFAMsTIGR015576.0E-211872IPR006447Myb domain, plants
PfamPF143791.4E-10121164IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MSSLGGQQQH GRGDEARARL RWTRQLHGRF VLAVAQLGGA DKATPKSVMR AMAVSGLTLY  60
HLKSHLQRYR LAVSQGTASP VGEGDNGGGA NERSSSSESQ LDEYDDGSVA DLHGDSSGSM  120
AARVQREAKR KRHEQMQIEV QRHLQLRIEA QGRYMQSVLR RAQEALADHI LGSPATGAEA  180
ELSELASAVE TGTGCLSSTS CCSTSPSPMR HRSADSCVTS SSSSSSSEAE SQAPAGANTC  240
AGTRDCSVER PVQGEESTFL QRHEDEDEAE EADVGAAAAA EDEDGTSSEI DLNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-171772156Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-171772156Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-171772156Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-171772156Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G117193
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G117193_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9689750.0EU968975.1 Zea mays clone 325336 MYR1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340516.10.0uncharacterized protein LOC100274073
TrEMBLB6TVG00.0B6TVG0_MAIZE; G2-like transcription factor
STRINGGRMZM2G117193_P031e-164(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.39e-41G2-like family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]