PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G114688_P01
Common NameZm.122536
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 439aa    MW: 50285.1 Da    PI: 7.1533
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G114688_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.11.2e-06159180324
                        S---SGGGGTS--TTTTT-SS- CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFa 24 
                        t+ Crf++    CkyG++C+F+
  GRMZM2G114688_P01 159 TKTCRFYLSIRKCKYGENCHFS 180
                        789******************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.2E-6154179IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.408156180IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-4159180IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.70.3302.1E-4310380IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549286.52E-8312385IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0009089anatomyendosperm
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MDIEECRTRL QDKVRLLHPK NAEGIVDYMI ANTPLENIRS YLLTATDNVL MNLFEGANRL  60
QNILNLSEEN EPLFGLFTPF DQIGPQKQHQ FSSRNHSQVL QAPLYPIGPS GAFQNPYSKL  120
TGFRDHFQSL SILDGDTPSH YKCASINVGG YPSNGKVQTK TCRFYLSIRK CKYGENCHFS  180
LVCGYPEIND MRQVDHLGSL QMLEMEIDLL LLQPSSQVPV DHLEKKFLEI YTKLLEIDGF  240
HTEDQRNRKT GYGLTDLFMQ LNATRETERR GRYYVVLVKD APKYVTHGFQ PAVPLAGSDF  300
NKICVTFKSE SIFTHTDVQN YFSQYGTVSE ERFSEERHMH GHVSFVDLET AKRIISESGP  360
HFICGNEVRA KAYREKHELN FRQGRHNVVP VEDAPKYMTG GFVLEMPPAS SASNKIFITF  420
NCIHIFTHTS VQKYFRCPV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1225360.0embryo
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G114688
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G114688_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9694150.0EU969415.1 Zea mays clone 329865 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008653288.10.0putative zinc finger CCCH domain-containing protein 51
TrEMBLA0A3L6D8A80.0A0A3L6D8A8_MAIZE; Putative zinc finger CCCH domain-containing protein 51
STRINGGRMZM2G114688_P010.0(Zea mays)