PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G109987_P04
Common NameZEAMMB73_130618, Zm.94098
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HD-ZIP
Protein Properties Length: 528aa    MW: 58193 Da    PI: 8.8366
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G109987_P04genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-183088357
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       k  ++t+eq+e+Le+l+  +++ps ++r++L +++    +++ +q+kvWFqNrR ++k+
  GRMZM2G109987_P04 30 KYVRYTPEQVEVLERLYIDCPKPSSSRRQQLLRECpilsNIEPKQIKVWFQNRRCRDKQ 88
                       5678****************************************************996 PP
2START159.82.2e-501683762205
                        HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
              START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                        +aee+ +e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  ++++  e+l d++  W +++++ e+  +   g  g++
  GRMZM2G109987_P04 168 IAEETFTEFLSKATGTAIDWVQMPGMKPGPDSVGIVAISHGCRGVAARACGLVNLEPTKGIEILKDRP-SWFRDCRSLEVFTRFPAGngGTI 258
                        688999****************************************************8888888888.***************99999*** PP

                        EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
              START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                        +l++++++a+++lvp Rdf+++Ry+ ++++g++v++++S++     p+   ++++vRae+lpSg+l++p+++g+s v++v+h dl+++++++
  GRMZM2G109987_P04 259 ELIYMQMYAPTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGGGPNaasTQQFVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPE 350
                        *****************************************999999999999*************************************** PP

                        HHHHHHHHHHHHHHHHHHHHTXXXXX CS
              START 180 llrslvksglaegaktwvatlqrqce 205
                        +lr+l++s+++ ++k+++ +l+++++
  GRMZM2G109987_P04 351 VLRPLYESSRVVAQKMTTVALRHLRQ 376
                        *****************999998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.2892589IPR001356Homeobox domain
SMARTSM003893.9E-152793IPR001356Homeobox domain
SuperFamilySSF466894.71E-162991IPR009057Homeodomain-like
CDDcd000861.10E-153090No hitNo description
PfamPF000463.0E-163188IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-173288IPR009057Homeodomain-like
CDDcd146864.58E-682121No hitNo description
PROSITE profilePS5084826.025158386IPR002913START domain
CDDcd088753.20E-76162378No hitNo description
Gene3DG3DSA:3.30.530.202.7E-21166351IPR023393START-like domain
SMARTSM002341.1E-37167377IPR002913START domain
SuperFamilySSF559615.93E-36168379No hitNo description
PfamPF018523.4E-48168376IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MGTMVAAVAL RGGSSDSGGF DKVPGMDSGK YVRYTPEQVE VLERLYIDCP KPSSSRRQQL  60
LRECPILSNI EPKQIKVWFQ NRRCRDKQRK ESSRLQAVNR KLTAMNKLLM EENERLQKQV  120
SQLVHENAHM RQQLQNTSLA NDTSCESNVT TPPNPIRDAS NPSGLLAIAE ETFTEFLSKA  180
TGTAIDWVQM PGMKPGPDSV GIVAISHGCR GVAARACGLV NLEPTKGIEI LKDRPSWFRD  240
CRSLEVFTRF PAGNGGTIEL IYMQMYAPTT LVPARDFWTL RYTTTMEDGS LVVCERSLSG  300
SGGGPNAAST QQFVRAEMLP SGYLVRPCEG GGSIVHIVDH LDLEAWSVPE VLRPLYESSR  360
VVAQKMTTVA LRHLRQIAQE TSGEVVYALG RQPAVLRTFS QRLSRGFNDA ISGFNDDGWS  420
VMGGDGIEDV VIACNSTKKI RNTSNAGITF GAPGGIICAK ASMLLQVRVI IVCVKALSVQ  480
SFHILYLEIK GEKQVPLHIA LCRSKQMNCR ILLSYIVPLN QKHNIVLV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.940980.0cell culture| ear| embryo| endosperm| meristem| pericarp| root| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G109987
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G109987_P04
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR166 in the shoot apicam meristem (SAM) region of devoloping embryo. {ECO:0000269|PubMed:17804793}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5014300.0AY501430.1 Zea mays rolled leaf1 mRNA, complete cds.
GenBankBT0662870.0BT066287.1 Zea mays full-length cDNA clone ZM_BFc0170B17 mRNA, complete cds.
GenBankKJ7276060.0KJ727606.1 Zea mays clone pUT5466 HB transcription factor (HB133) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001296150.10.0rolled leaf 1
SwissprotQ6TAQ60.0HOX10_ORYSJ; Homeobox-leucine zipper protein HOX10
TrEMBLK7VI140.0K7VI14_MAIZE; Homeobox-leucine zipper protein REVOLUTA
STRINGGRMZM2G109987_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]