PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G108798_P01
Common NameLOC103629573
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family SRS
Protein Properties Length: 331aa    MW: 33376.9 Da    PI: 8.7765
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G108798_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702217.72.5e-671082624154
             DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrel..kskkqsalsstkl 91 
                         ++sCqdCGn+akkdC h+RCRtCC+srgf+C thvkstWvpaakrrerqqqlaa+ + aa+s+  a+aaskr+rel  +  +  +++s+ +
  GRMZM2G108798_P01 108 AGTSCQDCGNNAKKDCPHMRCRTCCRSRGFSCPTHVKSTWVPAAKRRERQQQLAALFRGAANSNsaAAAASKRPRELvrSLGRLPSANSAMV 199
                        4579*****************************************************99988876678889999998653344445555555 PP

             DUF702  92 ssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                        ++++s+      ++P+e+s+eavfrcvr++ vd+ ++elaYqtav+igGh+fkGiL+d+G+++
  GRMZM2G108798_P01 200 TTTTSSGDGGGGRFPPELSVEAVFRCVRIGPVDEPDAELAYQTAVNIGGHTFKGILRDHGPAD 262
                        5566666677888***********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.7E-63109261IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.5E-25111153IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016245.8E-19212260IPR006511Lateral Root Primordium type 1, C-terminal
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0020127anatomyprimary root
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007015developmental stageradicle emergence stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MAGFSLRSGG AGGGGGGRGG DRGGDHSIGA DSLFLYARGA AAAAADTAAS GGGIGFQLWH  60
PHQVQQAAAA PHTSQFFSSG AVATGVVLGF SSHDGGAAGI AGAGGGRAGT SCQDCGNNAK  120
KDCPHMRCRT CCRSRGFSCP THVKSTWVPA AKRRERQQQL AALFRGAANS NSAAAAASKR  180
PRELVRSLGR LPSANSAMVT TTTSSGDGGG GRFPPELSVE AVFRCVRIGP VDEPDAELAY  240
QTAVNIGGHT FKGILRDHGP ADDAGHLPPP SAEYHHHQLT AGQAREAPSP AGSSEAAATA  300
ATSAAVLMDP YPTPIGAFAA GTQFFPHNPR T
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.928890.0cell culture| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G108798
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G108798_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0043291e-107AP004329.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1663_H12.
GenBankAP0054631e-107AP005463.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0712G01.
GenBankAP0149621e-107AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008648873.10.0protein SHI RELATED SEQUENCE 1
TrEMBLA0A1D6LN360.0A0A1D6LN36_MAIZE; Protein SHI RELATED SEQUENCE 1
TrEMBLA0A3L6E6E40.0A0A3L6E6E4_MAIZE; Protein SHI RELATED SEQUENCE 1
STRINGGRMZM2G108798_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Representative plantOGRP18721140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.14e-51Lateral root primordium (LRP) protein-related