PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G108424_P02
Common NameHON108, SMH4
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 288aa    MW: 31335.8 Da    PI: 9.9669
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G108424_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.84.4e-12556147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                       +++WT eE++ l  +v+++G g W+tI +          R+  ++k++w+++
  GRMZM2G108424_P02  5 KQKWTSEEEDALRAGVRKHGAGKWRTIQKDPEfspvlSSRSNIDLKDKWRNL 56
                       79***********************************9************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.768160IPR017930Myb domain
SMARTSM007174.4E-8459IPR001005SANT/Myb domain
PfamPF002491.7E-8556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-14556IPR009057Homeodomain-like
SuperFamilySSF466894.29E-14659IPR009057Homeodomain-like
CDDcd116603.97E-21656No hitNo description
SuperFamilySSF467855.98E-15110190IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005261.6E-15111176IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.108.3E-13112185IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150424.054113181IPR005818Linker histone H1/H5, domain H15
PfamPF005382.5E-9115173IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0000781Cellular Componentchromosome, telomeric region
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0009025anatomyvascular leaf
PO:0020126anatomytassel inflorescence
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGAPKQKWTS EEEDALRAGV RKHGAGKWRT IQKDPEFSPV LSSRSNIDLK DKWRNLSFSA  60
SGLGSSKLRV PKITGPSSSP SSSSQPLLLP AANKFTEATL PADAEKKPQD GKTLPKYGAM  120
IMEALLELNE PNGSDIAAIF GFIEQRYAVQ PTFRRFLASK LRRLADSNKI EKIDKSYRLP  180
DSLATRTPAP MNASAPKQKD PSKPSKVSKA IGLFSASSPA LEAAMAAAVK VADAEAKAHD  240
AHDQTMEAER IFKMAEDTES LLIIAAEIYD RCSRGEITTL VPVAQREI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.44660.0embryo| meristem| ovary| pedicel| pollen| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G108424
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G108424_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4618150.0AF461815.1 Zea mays histone H1-like protein (hon108) mRNA, complete cds.
GenBankBT0627120.0BT062712.1 Zea mays full-length cDNA clone ZM_BFb0336L09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105227.20.0single myb histone 4
SwissprotQ8W1190.0SMH4_MAIZE; Single myb histone 4
TrEMBLA0A060CZ300.0A0A060CZ30_MAIZE; Homeodomain-like/winged-helix DNA-binding family protein (Fragment)
STRINGGRMZM2G108424_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92473442
Representative plantOGRP8551659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.22e-48MYB_related family protein
Publications ? help Back to Top
  1. Marian CO, et al.
    The maize Single myb histone 1 gene, Smh1, belongs to a novel gene family and encodes a protein that binds telomere DNA repeats in vitro.
    Plant Physiol., 2003. 133(3): p. 1336-50
    [PMID:14576282]
  2. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]