PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G107560_P01
Common NamebHLH95, LOC103647596
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 291aa    MW: 31455.4 Da    PI: 5.2056
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G107560_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.63.9e-12127172454
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        +h e+Er+RR+++N +f  Lr  +P+       +++Ka+ L  A  YI +L
  GRMZM2G107560_P01 127 SHVEAERQRREKLNRRFCDLRAAVPTV-----SRMDKASLLADAAAYIAEL 172
                        89************************6.....49**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.021123172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-15125185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.10E-11126173No hitNo description
PfamPF000101.5E-9126172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-15127185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-10129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009089anatomyendosperm
PO:0025142anatomyleaf tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDDLLSPCSS FSPPSPPPFF SHAGNPVIEF ASCEVPEQWL LDDVVLDKNE GRYDDVDDLW  60
PVAGRSLSPD SELSEQPLPT QPVPLPPPQQ QQQELTSVTA APAQQQRPGG KRRGRKPGPR  120
PDGPTVSHVE AERQRREKLN RRFCDLRAAV PTVSRMDKAS LLADAAAYIA ELRGRIARLE  180
ADSRRAAAAR WVDPVAAAAS CGADEAVEVR MLGPDVAAVR ATSAAPHAPA RLMSALRSLE  240
LHVQHACVTR VNGMTVQDVV VDVASPLQVQ DDDHDGLRAA LLQRMQDSAA T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-17126182763Transcription factor MYC2
5gnj_B3e-17126182763Transcription factor MYC2
5gnj_E3e-17126182763Transcription factor MYC2
5gnj_F3e-17126182763Transcription factor MYC2
5gnj_G3e-17126182763Transcription factor MYC2
5gnj_I3e-17126182763Transcription factor MYC2
5gnj_M3e-17126182763Transcription factor MYC2
5gnj_N3e-17126182763Transcription factor MYC2
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G107560
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G107560_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269710.0KJ726971.1 Zea mays clone pUT3672 bHLH transcription factor (bHLH95) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020404956.11e-165transcription factor MYC2
TrEMBLA0A060CZ290.0A0A060CZ29_MAIZE; BHLH transcription factor (Fragment)
STRINGGRMZM2G107560_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Representative plantOGRP1312745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.12e-20bHLH family protein