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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G107491_P03 | ||||||||
Common Name | LOC100283646, ZEAMMB73_594165 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C3H | ||||||||
Protein Properties | Length: 375aa MW: 40631.9 Da PI: 8.3447 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.9 | 1.1e-10 | 70 | 96 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C++G +C+F+H+p GRMZM2G107491_P03 70 PGEPDCTYYLRTGLCRFGMSCRFNHPP 96 5789*********************97 PP | |||||||
2 | zf-CCCH | 38.3 | 2.2e-12 | 117 | 141 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ GRMZM2G107491_P03 117 QPECQYYLKTGTCKFGPTCKFHHPR 141 799********************96 PP | |||||||
3 | zf-CCCH | 39.9 | 7.2e-13 | 262 | 287 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG Ck+G+ CkF+H++ GRMZM2G107491_P03 262 DEPECQYYMKTGDCKFGAVCKFHHPR 287 789*********************96 PP | |||||||
4 | zf-CCCH | 42.1 | 1.5e-13 | 307 | 332 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++elC+f++r+G+Ck+G++CkF H+ GRMZM2G107491_P03 307 PGEELCKFYSRYGICKFGANCKFDHP 332 689**********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.971 | 69 | 97 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.0E-5 | 69 | 96 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-8 | 71 | 96 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-5 | 74 | 97 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-4 | 75 | 95 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.694 | 114 | 142 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.1E-6 | 114 | 141 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.7E-10 | 117 | 141 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.27E-6 | 118 | 143 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-5 | 120 | 142 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.695 | 260 | 288 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.5E-5 | 260 | 287 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-9 | 262 | 287 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-5 | 263 | 287 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-4 | 266 | 286 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.413 | 306 | 334 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5E-7 | 306 | 333 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-6 | 307 | 333 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.6E-11 | 308 | 332 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-5 | 310 | 331 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MDDAGRAPPP APAAVTVSAT AAPAPTPPSA TAAADKSSLD PDALYEEGMW QQMAMNSGAT 60 MQPGSYPERP GEPDCTYYLR TGLCRFGMSC RFNHPPDRNL AIASARMKGE YPERVGQPEC 120 QYYLKTGTCK FGPTCKFHHP REKAGIAGRV QLNTLGYPLL PSYTGTMSSW TFPRASFIPS 180 PRWQSPSNYA PMVVPHGLVQ VPSWNSYPGQ LQSPGAQQTY GSSQQGEASA GNQGMLSPYR 240 SSSFPVPQYA LQRDNVFPER PDEPECQYYM KTGDCKFGAV CKFHHPRVRS QPPPDCVLSP 300 MGLPIRPGEE LCKFYSRYGI CKFGANCKFD HPTMAAPMGV YAYGFSGSAS VAPASTNAPM 360 TRHLLGSPSG SGYMS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.97161 | 0.0 | endosperm| glume| leaf| meristem| pericarp |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G107491 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G107491_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT037035 | 0.0 | BT037035.1 Zea mays full-length cDNA clone ZM_BFb0152E14 mRNA, complete cds. | |||
GenBank | BT067051 | 0.0 | BT067051.1 Zea mays full-length cDNA clone ZM_BFb0168E04 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001150019.2 | 0.0 | zinc finger CCCH type domain-containing protein ZFN-like 2 | ||||
Swissprot | Q5JLB5 | 0.0 | C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | A0A3L6DL57 | 0.0 | A0A3L6DL57_MAIZE; Zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | B4FIU7 | 0.0 | B4FIU7_MAIZE; Zinc finger CCCH domain-containing protein 33 | ||||
TrEMBL | K0DCM5 | 0.0 | K0DCM5_MAIZE; C3H49 C3H type transcription factor (Fragment) | ||||
STRING | GRMZM2G107491_P01 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-131 | zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G107491_P03 |
Publications ? help Back to Top | |||
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