PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G107276_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 267aa MW: 28317.1 Da PI: 12.0347 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.2 | 3.5e-14 | 149 | 195 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+Er RR+riN +++Lr+llP+ +K +Ka+ L +++e++k+L GRMZM2G107276_P01 149 RSHSEAERSRRQRINGHLAKLRSLLPNT-----TKTDKASLLAEVIEHVKEL 195 78*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.628 | 146 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.93E-14 | 149 | 198 | No hit | No description |
Pfam | PF00010 | 1.3E-11 | 149 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.16E-14 | 149 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-13 | 150 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.5E-13 | 152 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MWEGGGSHAH EALLLQAAGS GAADYGHAGP SLLRPWLGPA AASGFSYMAP NHAQPGPLGA 60 EAAVASRFGF GGGGYSDGGV EQEQFVVIGS AETVPPRHSL QAAGVGGRTT ALLPHGPRMV 120 SGLLGTLQAE LGRMTAKEIM DAKALAASRS HSEAERSRRQ RINGHLAKLR SLLPNTTKTD 180 KASLLAEVIE HVKELKRQTS AAARQRHLLL PTEADDLFGG RRGGRRRRQA RRAGVAVLRG 240 PRGPHPRHRP RARRAQPAGP PRRDRHA |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G107276 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G107276_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109616 | 1e-100 | AK109616.1 Oryza sativa Japonica Group cDNA clone:002-137-H01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020402268.1 | 1e-151 | transcription factor bHLH30 | ||||
TrEMBL | A0A1D6KP73 | 1e-150 | A0A1D6KP73_MAIZE; Transcription factor AIG1 | ||||
STRING | GRMZM2G107276_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP24675 | 5 | 6 |
Representative plant | OGRP377 | 15 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 1e-28 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G107276_P01 |