PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G105317_P01 | ||||||||
Common Name | LOC100304013 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NF-YC | ||||||||
Protein Properties | Length: 234aa MW: 25511 Da PI: 4.5361 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 40.6 | 5.7e-13 | 1 | 69 | 30 | 98 |
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +Pvl+s+a elf+ +l r++ + ++ +tl+ ++++v+r fdfl+++v + GRMZM2G105317_P01 1 MQADEDVGKIALAVPVLVSRALELFLQDLIDRTYEITLQSGAKTLNSFHLKQCVKRYSSFDFLTEVVSK 69 899**************************************************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.3E-18 | 1 | 71 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 8.1E-18 | 1 | 68 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.9E-12 | 1 | 54 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MQADEDVGKI ALAVPVLVSR ALELFLQDLI DRTYEITLQS GAKTLNSFHL KQCVKRYSSF 60 DFLTEVVSKV PDLGGADSCG DERVLPRRRK SNGSDPENDE SRSSKMAIRN ANTSPRGRGR 120 GRGRGRGRPP TKRKEVGYVQ FEDESSMFAE QGETLPGEGT VPEINSGNEI TPQSTQPPLT 180 APAQATNSKV EEASTDHQSD WPMPDATGNI GVGPSGFGHL TVQVDEDEDY DNED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 2e-15 | 1 | 54 | 21 | 74 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 85 | 89 | PRRRK |
2 | 117 | 126 | RGRGRGRGRG |
3 | 117 | 127 | RGRGRGRGRGR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.96688 | 0.0 | ear| embryo| endosperm| meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G105317 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G105317_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT062754 | 0.0 | BT062754.1 Zea mays full-length cDNA clone ZM_BFb0342F17 mRNA, complete cds. | |||
GenBank | EU964689 | 0.0 | EU964689.1 Zea mays clone 280866 repressor protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001159016.1 | 1e-173 | repressor protein | ||||
Refseq | XP_008668194.1 | 1e-173 | repressor protein isoform X1 | ||||
Refseq | XP_008668196.1 | 1e-173 | repressor protein isoform X1 | ||||
Refseq | XP_020403401.1 | 1e-173 | repressor protein isoform X1 | ||||
Refseq | XP_020403402.1 | 1e-173 | repressor protein isoform X1 | ||||
TrEMBL | A0A096RNP6 | 1e-172 | A0A096RNP6_MAIZE; Nuclear factor Y subunit C11 | ||||
TrEMBL | B6TI74 | 1e-172 | B6TI74_MAIZE; Nuclear factor Y subunit C11 | ||||
TrEMBL | K0DCL1 | 1e-172 | K0DCL1_MAIZE; CA5P8 CCAAT-HAP5 type transcription factor (Fragment) | ||||
STRING | GRMZM2G105317_P03 | 1e-173 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 1e-40 | nuclear factor Y, subunit C11 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G105317_P01 |
Entrez Gene | 100304013 |
Publications ? help Back to Top | |||
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