PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G104342_P01
Common NameLOC103625927, Zm.24071
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 569aa    MW: 61233.7 Da    PI: 4.8845
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G104342_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS346.54.3e-1061985693374
               GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                        + Ll+c +  ++  + la a La+++  as dgdp +R+a+yf+ ALa+rla  + +  ++ +   +s+   +e +  +k++++++P+ kf+
  GRMZM2G104342_P01 198 QSLLACSRTAAA-GTGLAAAELAEVRAAASDDGDPAERVAFYFADALARRLAC-GGGAQAQPSLAVDSRFAPDELTLCYKTLNDACPYSKFA 287
                        779999997766.56788889*******************************8.33333333333444445899999*************** PP

               GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183
                        hltaNqaIlea+  ++++Hi+Df+i qG+QW+aLlqaLa+Rp+++p ++Ri gv sp  g   + +l +t  rL++fA+ lgv+fef + + 
  GRMZM2G104342_P01 288 HLTANQAILEATGAATKIHIVDFGIVQGIQWAALLQALATRPGEKPsRVRISGVPSPYLGpkPAASLAATSARLRDFAKLLGVDFEFVP-LL 378
                        ******************************************665559********998888999************************.59 PP

               GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                        + +++l+ +++ v+p+E++aVn++lql++ll   ++++++ ++vL+lvksl P vv++ e e+++n++ F++rf++al yy  +f+sl++ +
  GRMZM2G104342_P01 379 RPVHELDRSDFLVEPDETVAVNFMLQLYHLL---GDSDEPVRRVLRLVKSLDPSVVTLGEYEVSLNRAGFVDRFANALLYYKPVFESLDVAM 467
                        9******************************...66666777************************************************** PP

               GRAS 276 preseerikvErellgreivnvva.cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkd 364
                        pr+s er+ vEr ++g++i+ ++   egaer+ r+   ++W+  +e +GF+pv+ls++a++qa+lll +++ +  y++ e   +++ l W++
  GRMZM2G104342_P01 468 PRDSPERVRVERCMFGERIRRAIGpEEGAERTDRMAASREWQTLMEWCGFEPVKLSNYAMSQADLLLWNYDsKYKYSLVELPPAFLsLAWEK 559
                        ***********************8356899*****************************************7778999999999988***** PP

               GRAS 365 rpLvsvSaWr 374
                        +pL++vSaWr
  GRMZM2G104342_P01 560 QPLLTVSAWR 569
                        *********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.103170547IPR005202Transcription factor GRAS
PfamPF035141.5E-103198569IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQVIQ QQQQQQQQEH QRHHHHHLPM PLPLPPPPRQ ALPMPPATAP  60
PHGQIPAASL PYGGGAWPQA DHFFPDAFVG TSAADAVFSD LAAAADFDSD VWMNSLIGDA  120
PVFADSDLER LIFTTPPPPP PVPAPAPAPA SAVAPVDAAA QPEAATPASL PQPAAVAAPA  180
ACSSPSSLDA ACSAPILQSL LACSRTAAAG TGLAAAELAE VRAAASDDGD PAERVAFYFA  240
DALARRLACG GGAQAQPSLA VDSRFAPDEL TLCYKTLNDA CPYSKFAHLT ANQAILEATG  300
AATKIHIVDF GIVQGIQWAA LLQALATRPG EKPSRVRISG VPSPYLGPKP AASLAATSAR  360
LRDFAKLLGV DFEFVPLLRP VHELDRSDFL VEPDETVAVN FMLQLYHLLG DSDEPVRRVL  420
RLVKSLDPSV VTLGEYEVSL NRAGFVDRFA NALLYYKPVF ESLDVAMPRD SPERVRVERC  480
MFGERIRRAI GPEEGAERTD RMAASREWQT LMEWCGFEPV KLSNYAMSQA DLLLWNYDSK  540
YKYSLVELPP AFLSLAWEKQ PLLTVSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A0.01935691375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.240710.0meristem| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G104342
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (PubMed:27081181). {ECO:0000250|UniProtKB:A0A024B7I0, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:27081181}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G104342_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7270180.0KJ727018.1 Zea mays clone pUT3999 GRAS transcription factor (GRAS55) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008644549.10.0scarecrow-like protein 4
SwissprotQ53K160.0SCL7_ORYSJ; SCARECROW-LIKE protein 7
TrEMBLA0A1D6GIN10.0A0A1D6GIN1_MAIZE; Scarecrow-like protein 7
STRINGGRMZM2G104342_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85693748
Representative plantOGRP67991519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-127GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li S, et al.
    Crystal Structure of the GRAS Domain of SCARECROW-LIKE7 in Oryza sativa.
    Plant Cell, 2016. 28(5): p. 1025-34
    [PMID:27081181]