PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G104268_P02
Common NameZEAMMB73_033846
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family FAR1
Protein Properties Length: 1047aa    MW: 118414 Da    PI: 6.2913
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G104268_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.37.1e-20311397190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                        +fY +Y+ ++GF ++++++++   +g  +++tf Csk g+++ ++    ++  ++   +tgCkak+ vk  + +++wev+ leleHnH+l 
  GRMZM2G104268_P02 311 QFYVTYGCHAGFGITRRSNNTF--DGFRYRSTFICSKGGQSRLRSGV--TKPARKRGVKTGCKAKMIVKDAHfQNRWEVIVLELEHNHPLD 397
                        6****************99988..9999**************99877..7777788899*************9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.990.101.1E-1623105IPR023173NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain-3
SuperFamilySSF633801.04E-1423109IPR017938Riboflavin synthase-like beta-barrel
PfamPF006673.0E-1225105IPR003097FAD-binding, type 1
PRINTSPR003711.9E-10167186IPR001709Flavoprotein pyridine nucleotide cytochrome reductase
Gene3DG3DSA:3.40.50.808.7E-26174253No hitNo description
SuperFamilySSF523437.04E-19174254No hitNo description
PfamPF001752.1E-6174253IPR001433Oxidoreductase FAD/NAD(P)-binding
PRINTSPR003711.9E-10196205IPR001709Flavoprotein pyridine nucleotide cytochrome reductase
PRINTSPR003711.9E-10209220IPR001709Flavoprotein pyridine nucleotide cytochrome reductase
PRINTSPR003711.9E-10240256IPR001709Flavoprotein pyridine nucleotide cytochrome reductase
PfamPF031011.3E-17311398IPR004330FAR1 DNA binding domain
PfamPF105519.2E-20520609IPR018289MULE transposase domain
PfamPF044341.1E-5799831IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.174799835IPR007527Zinc finger, SWIM-type
SMARTSM005750.0015810837IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0008270Molecular Functionzinc ion binding
GO:0016491Molecular Functionoxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1047 aa     Download sequence    Send to blast
MAPLQTSAST TSVTASSGVT AESLLDLSPD TVFSIHADAE DGSPRKGGGS LAPPFPSPCT  60
LRTTLLRYAD LLNPPKKAAL LALASHASDP AEAERLRFLA SPAGKGGRFA SSIMWEPVAL  120
GLLFYRTVLF MPVWHTMLEV VDGSLQNSCN MCISFWAFTN RKDPPRSLFN MDEGLAPFRG  180
FLQERLALKQ SGAELGTSIL FFGCRNRNMD YIYEDELQTF LEAGALSELI VAFSQEGPTK  240
EYVQHKMVEK SDLKILEPME EEEYSSETSN EEDGEKEGNA AESDVFRPVD VDPACLPRVG  300
MIFDSEEDAF QFYVTYGCHA GFGITRRSNN TFDGFRYRST FICSKGGQSR LRSGVTKPAR  360
KRGVKTGCKA KMIVKDAHFQ NRWEVIVLEL EHNHPLDPNL LKFKRHLKNS PFTINPPQIC  420
ESEGQQSNSA LVHSSRVVDT GITSSSTQIE FKAKIDRNRK LKLAEGDLDA LLDFLNKMQD  480
QNPCFFYSLD MNEQGQLRNV FWSDAKSRSS YNYFGDVVAI NVTNFSDQYD MQFVSFMGTN  540
HHAQPVLLGC GLLAGRSLGA YVWLFGTWLR CMNAKPPHSI ITNYCHDVAI AIKKVFPNAR  600
HRFCLSHILN VLPEKLEEID NKDEIISTFT TLAYDYVTMT DFDREWQDTI QHFRLERNEW  660
LSKLYEVRMQ WAPVYVKDSF WAGMSVTDRS DSVTDYFDGW LMSGTSLKMF VEQYEEAVKG  720
KLEKESYEDL RSAQMRPPMV TGLPVEDQAA KVYTAEIFQK FFNEIGHSFH CNYNILERNE  780
SVVTYIVSEH VDQTNKVDYK VAYDNVQGDI WCLCRLYQSK GILCRHALTV LRQELVLMIP  840
QKYIIHRWCK DCKQTCASIS QPVSAEVVEF GSMNSESKEY ALSIMREVRD KVISYEKSLR  900
DQRVDSHVST ANFAYNPVNE DFTDDALPIS LSTKGWDLTQ GQSKRSRKKK LATPTVLDTL  960
KKKTKRAYNK RRNATANTLN TSATATDGIT DGTNVQQNPV NEGWQLASTS APETFSYGVE  1020
NISFDLSQYN NAPSFHWPES SSRSQLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gxu_A5e-5324251298577NADPH--cytochrome P450 reductase 2
5gxu_B5e-5324251298577NADPH--cytochrome P450 reductase 2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.19501e-143endosperm| meristem| pericarp| pollen| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G104268
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G104268_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020401724.10.0protein FAR1-RELATED SEQUENCE 6 isoform X1
TrEMBLA0A1D6JGA30.0A0A1D6JGA3_MAIZE; Protein FAR1-RELATED SEQUENCE 6
STRINGGRMZM2G104268_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP1398944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-104FAR1-related sequence 6