PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G104246_P01
Common NameZEAMMB73_286736, Zm.22498
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family CPP
Protein Properties Length: 412aa    MW: 44687.5 Da    PI: 9.3546
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G104246_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR41.23.3e-13153192242
                TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                        +kk CnC++s+Clk+YCeCfa+g++C+  C+C++C+N+ e+
  GRMZM2G104246_P01 153 KKKCCNCRNSRCLKLYCECFASGTHCDG-CNCTNCFNNPEN 192
                        799*************************.********9875 PP
2TCR51.61.9e-16236275140
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                        k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  GRMZM2G104246_P01 236 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 275
                        589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.5E-13152192IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.413153276IPR005172CRC domain
PfamPF036381.8E-9154189IPR005172CRC domain
SMARTSM011148.4E-20236277IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.2E-13239274IPR005172CRC domain
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006505anatomycentral spike of ear inflorescence
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009066anatomyanther
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MAGKEQGGGG PPQRPPMPAA SMQPPIKKLV RQLDFNSAAL AGNPAMAAAA AAVSRALQPR  60
ALPAGFQHPQ HVRAAVPMVV PQQLHQRALP VMRPHPVVGH VPRHAVPLAV PVPQLRPMPP  120
QPVQRPPVAV PLKPDSPKPW ARLYEGKDST PTKKKCCNCR NSRCLKLYCE CFASGTHCDG  180
CNCTNCFNNP ENEVARREAI EATLERNPDA FRPKIGSSPH TNRNNEVSSD LPLVGKHNKG  240
CHCKKSGCLK KYCECFQANI LCSENCKCMD CKNFEGSEER RNLFQGDHKN AINIQQATNA  300
AVNGAIGTTG FPSPSTSRKR KHIDPSLDHS NKEHAAHRNC HIPQKNAVPD GSIPISQSAH  360
PPTLGPFKVT YRPLLADIVQ AEDVKELCKL LVVVSGEAAK TYAGTALVFM LI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-2915728414131Protein lin-54 homolog
5fd3_B1e-2915728414131Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.224980.0embryo| meristem| ovary| pericarp| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G104246
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G104246_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0672400.0BT067240.1 Zea mays full-length cDNA clone ZM_BFb0345D13 mRNA, complete cds.
GenBankHQ8586710.0HQ858671.1 Zea mays clone UT1107 CPP transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008657203.10.0protein tesmin/TSO1-like CXC 5
TrEMBLA0A1D6GB290.0A0A1D6GB29_MAIZE; Protein tesmin/TSO1-like CXC 5
STRINGGRMZM2G104246_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47303657
Representative plantOGRP14691745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.17e-88Tesmin/TSO1-like CXC domain-containing protein