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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G100982_P01 | ||||||||
Common Name | EREB12, LOC103635354, ZEAMMB73_591751 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 263aa MW: 28486.1 Da PI: 10.3045 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 3e-19 | 108 | 158 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr++ +g+WvAeIr p + r r++lg+++++e Aa a+++a+ +l+ge GRMZM2G100982_P01 108 LYRGVRQRQ-WGKWVAEIRLPQN---RVRVWLGTYDSPETAAHAYDRAAHRLRGE 158 59****999.**********954...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.71E-27 | 107 | 165 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.8E-30 | 108 | 165 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.695 | 108 | 165 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.7E-32 | 108 | 171 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.08E-22 | 108 | 165 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.4E-13 | 109 | 158 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-9 | 109 | 120 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-9 | 131 | 147 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MDASLRTLPP AGSSFRGEVR SAVSSLLLSS RGTSALDSSF FSHLPPLGSS VYYRQCELLR 60 NFAASQTQQS AAAACSPSSS SSGLQLQTPV PHDDATAAAA ATLLRQKLYR GVRQRQWGKW 120 VAEIRLPQNR VRVWLGTYDS PETAAHAYDR AAHRLRGEYA RLNFPGVMDG PPGADCPDHL 180 RRLRAAVDAK IQAIRARRQQ RNKRESARSG ANAKLPTARP IASETSTTPD GVLSVSPASA 240 DGGCPLDRMP SFDSELIWEM LSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-18 | 105 | 165 | 2 | 63 | ATERF1 |
3gcc_A | 5e-18 | 105 | 165 | 2 | 63 | ATERF1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G100982 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G100982_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728278 | 0.0 | KJ728278.1 Zea mays clone pUT6557 AP2-EREBP transcription factor (EREB12) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008656052.1 | 0.0 | ethylene-responsive transcription factor ERF061 | ||||
Swissprot | Q9C7W2 | 3e-32 | ERF61_ARATH; Ethylene-responsive transcription factor ERF061 | ||||
TrEMBL | K7UTJ8 | 0.0 | K7UTJ8_MAIZE; AP2-EREBP transcription factor | ||||
STRING | GRMZM2G100982_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8828 | 28 | 42 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39780.1 | 7e-30 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G100982_P01 |
Entrez Gene | 103635354 |
Publications ? help Back to Top | |||
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