PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G099144_P01
Common NameLOC103646413
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 362aa    MW: 39900.4 Da    PI: 7.7908
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G099144_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.93.5e-52461751129
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                        +ppGfrFhPtdeel+ +yLkkkv  +k++l evi+evd++k+ePwdL++  ++ +  ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+d
  GRMZM2G099144_P01  46 VPPGFRFHPTDEELLLYYLKKKVGFEKFDL-EVIREVDLNKIEPWDLQErcRIGSaPQNEWYFFSHKDRKYPTGSRTNRATTAGFWKATGRD 136
                        69****************************.99**************963433332566********************************* PP

                NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                        k + + + +++g++ktLvfy+grap+g+k+dW+mheyrle
  GRMZM2G099144_P01 137 KCIRT-SYRKIGMRKTLVFYRGRAPHGQKSDWIMHEYRLE 175
                        ****9.8999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-6039197IPR003441NAC domain
PROSITE profilePS5100557.74846197IPR003441NAC domain
PfamPF023653.0E-2747174IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEWRSATRVY IRATGLSRVK VEGLDLGAGR LVIGLPMAAF SSSNGVPPGF RFHPTDEELL  60
LYYLKKKVGF EKFDLEVIRE VDLNKIEPWD LQERCRIGSA PQNEWYFFSH KDRKYPTGSR  120
TNRATTAGFW KATGRDKCIR TSYRKIGMRK TLVFYRGRAP HGQKSDWIMH EYRLEDADDA  180
QGGTSEDGWV VCRVFKKKCF FKIGGGEGST SQSADAGGHL AVSPPLGGHH DQQARAALAY  240
MHPHPYYHHA SSYYSQMHAP GPHAAAYSHH VQVQDLLTNH RPTDDGAGTS YDFSGLPVEH  300
HPGGGLDVGT SDGVATDGGE TTGTAAEQWQ AMDGFSNGGS AAVQQMTGAQ RGGEMDLWGY  360
GR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-544619817166NO APICAL MERISTEM PROTEIN
1ut4_B9e-544619817166NO APICAL MERISTEM PROTEIN
1ut7_A9e-544619817166NO APICAL MERISTEM PROTEIN
1ut7_B9e-544619817166NO APICAL MERISTEM PROTEIN
3swm_A1e-534619820169NAC domain-containing protein 19
3swm_B1e-534619820169NAC domain-containing protein 19
3swm_C1e-534619820169NAC domain-containing protein 19
3swm_D1e-534619820169NAC domain-containing protein 19
3swp_A1e-534619820169NAC domain-containing protein 19
3swp_B1e-534619820169NAC domain-containing protein 19
3swp_C1e-534619820169NAC domain-containing protein 19
3swp_D1e-534619820169NAC domain-containing protein 19
4dul_A9e-544619817166NAC domain-containing protein 19
4dul_B9e-544619817166NAC domain-containing protein 19
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G099144
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detectable in lateral root development when they reach 10 mm long. {ECO:0000269|PubMed:20197506}.
UniprotTISSUE SPECIFICITY: Expressed throughout the root cap, in both columella (COL) and lateral root cap (LRC) cells, with higher levels in the COL-adjoining LRC than the upper LRC. Also present at low levels expression in the tips of cotyledons and the cotyledon vasculature, as weel as in vasculature of the first pair of true leaves and at the hydathodes. {ECO:0000269|PubMed:20197506}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00431DAPTransfer from AT4G10350Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G099144_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9715420.0EU971542.1 Zea mays clone 366845 NAC domain-containing protein 76 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008669372.20.0protein BEARSKIN2
SwissprotQ9SV871e-109BRN2_ARATH; Protein BEARSKIN2
TrEMBLA0A1D6E9V50.0A0A1D6E9V5_MAIZE; Protein BEARSKIN2
STRINGGRMZM2G099144_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92973046
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.13e-90NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]