PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G098884_P01
Common Namesi486017b03, ZEAMMB73_559685
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 591aa    MW: 68173.5 Da    PI: 9.1145
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G098884_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.41.6e-08377417346
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +WT+eE e++ + v++ G + Wk  a+++g  +++ ++k+ w+ 
  GRMZM2G098884_P01 377 KWTAEEYEIIRRFVEKNGRN-WKVLAKELG--KSEIHVKDTWRR 417
                        8*****************66.********8..9*******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.19301372IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-5304360IPR009057Homeodomain-like
PROSITE profilePS500904.252304357IPR017877Myb-like domain
PROSITE profilePS512949.88370423IPR017930Myb domain
SMARTSM007170.0011374421IPR001005SANT/Myb domain
SuperFamilySSF466895.69E-9376436IPR009057Homeodomain-like
CDDcd001670.00212377419No hitNo description
Gene3DG3DSA:1.10.10.604.5E-9377430IPR009057Homeodomain-like
PfamPF139217.3E-10378436No hitNo description
PROSITE profilePS500907.735420488IPR017877Myb-like domain
SMARTSM007170.074424490IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-5431471IPR009057Homeodomain-like
SuperFamilySSF466891.13E-6468546IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.5E-5472541IPR009057Homeodomain-like
PROSITE profilePS500908.142490543IPR017877Myb-like domain
SMARTSM0071715494545IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0009025anatomyvascular leaf
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020127anatomyprimary root
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025287anatomyseedling coleoptile
PO:0001052developmental stagevascular leaf expansion stage
PO:0007015developmental stageradicle emergence stage
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MSNKEEKECQ MTKEEKRRKK REKHKDMGQS GDYEGKAVMS NKEEKDCQVT EEEKKRKKGK  60
KHKDKGQGSN SDSSCARNHS IEMEQADVSA KMAEDSCLEH AEAVTSKSSA KKHRKKKRKD  120
KEVETIGQKQ ILDADENVGS EDTKRNSRER EHDRKSKKHK RKHQDDETAS NGSSGNQIVL  180
GEDKRTEKEY LVTLDLEEDN KSDMSKIGKK TDSKKKRRKE RNDGVDLRQN TLVGEGKNGK  240
NNKEKKMCED ENGGGEREKE NMGKQKDKCR RVSFTDHVEV FNIGGSDDVE GDGSGETELV  300
HGRRFSPEED AKLMEAILKY AELKQLGEKG LQMIGESNKH PETRGCWAEI GKALPHRPKK  360
AKYARGKVLL QRSAERKWTA EEYEIIRRFV EKNGRNWKVL AKELGKSEIH VKDTWRRIKF  420
KNLKRGTWSQ DEYQNLFDLV NLDMRVKAHQ NINTGHRHIR DNISWEAISE KLTTRRAEEC  480
CTKWYGQLAS PLVKQGIWAD TDDYMLVEAL QNVDAVCAED VDWENLLEHR SGELCRHRWN  540
QMIRLMGDHR YRPFIEQVEV LARRYCPEML AYRKPVAGGS SADEPAGASD L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15357KKRKK
2110118KKHRKKKRK
3113119RKKKRKD
4113120RKKKRKDK
5213217KKKRR
6213218KKKRRK
7214218KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.79350.0cell lignification| embryo| leaf| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G098884
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G098884_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7285030.0KJ728503.1 Zea mays clone pUT6808 MYB-related transcription factor (MYBR83) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149078.20.0uncharacterized protein LOC100282699
RefseqXP_008677258.10.0uncharacterized protein LOC100282699 isoform X1
TrEMBLA0A1D6PVQ90.0A0A1D6PVQ9_MAIZE; Putative MYB DNA-binding domain superfamily protein
STRINGGRMZM2G098884_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54052635
Representative plantOGRP53221418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.15e-93MYB_related family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]