PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G098696_P02
Common NameZEAMMB73_676522, Zm.86083
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HSF
Protein Properties Length: 383aa    MW: 41002.7 Da    PI: 6.6708
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G098696_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind100.71.3e-31371412102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT..X..TTSEEEEESXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks..k..ekiweFkhksFkkg 89 
                        Fl+k+y++++d++++++isw+++g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+Y    ++  ++  +   k  ++ weF+++ F++g
  GRMZM2G098696_P02  37 FLSKTYQLVDDPAVDDIISWNDDGSAFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYVSAPSRCIHRFVSGfrKivPDRWEFANDCFRRG 128
                        9**********************************************************98888777766444542569************* PP

                        XXXXXXXXXXXXX CS
       HSF_DNA-bind  90 kkellekikrkks 102
                        +k+ll++i+r+k 
  GRMZM2G098696_P02 129 EKRLLCDIHRRKV 141
                        **********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.2E-3528134IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.1E-5233139IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.86E-3134139IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.7E-2937139IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-153760IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-157587IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-1588100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0009089anatomyendosperm
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MAAEHATAAV GEPPPATSQP AEGVTAAAGQ RSVPTPFLSK TYQLVDDPAV DDIISWNDDG  60
SAFIVWRPAE FARDLLPKYF KHNNFSSFVR QLNTYVSAPS RCIHRFVSGF RKIVPDRWEF  120
ANDCFRRGEK RLLCDIHRRK VSPATGAVTV AAAAAAIPMA LPVGSPVYSG EEQVLSSSSP  180
EPPSLQQHPP APSGSGSGGV VSGDVGEENE RLRRENARLA RELGQMKKLC NNILLLMSKY  240
AATQQPDAAK EAAAGNCTGE SSDAAAAPPL PSILELLPSC RADPAPAAAG TDHEDDEKAG  300
ARLFGVSIGR KRMRDESDHH AGVCAAEVKA EPVDARPDQQ RQRNATEPQS WPIYRPRPVY  360
HPLRACNGSG SAGSDHDGSN DSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-232613919129Heat shock factor protein 1
5d5v_B2e-232613919129Heat shock factor protein 1
5d5v_D2e-232613919129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.860830.0endosperm| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G098696
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G098696_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9650330.0EU965033.1 Zea mays clone 283366 heat shock factor protein 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020407165.10.0heat shock factor protein 7 isoform X1
SwissprotQ6Z9C81e-144HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLA0A1D6QJG30.0A0A1D6QJG3_MAIZE; Heat stress transcription factor B-2b
STRINGGRMZM2G098696_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.11e-56HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]