PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G097683_P01
Common NameLOC103626446, Zm.92889
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family SRS
Protein Properties Length: 339aa    MW: 33766.3 Da    PI: 8.7745
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G097683_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702216.17.8e-671112694154
             DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa......aeaaskrkrel..kskkqsals 87 
                         ++sCqdCGn+akkdC+h+RCRtCC+srgf+C thvkstWvpaakrrerqqqlaa+ + aa+s+      a+aaskr+rel  +  +  +++
  GRMZM2G097683_P01 111 AGTSCQDCGNNAKKDCTHMRCRTCCRSRGFSCPTHVKSTWVPAAKRRERQQQLAALFRGAANSNsaaaaaAAAASKRPRELvrSLGRLPSAN 202
                        4579***************************************************9999888877777777788888888855333444445 PP

             DUF702  88 stklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                        s+ +++++s+      ++P+e+s+eavfrcvr++ vd+ ++elaYqtavsigGh+fkGiL+d+G+++
  GRMZM2G097683_P01 203 SAMVTTTTSSGDGGGGRFPPELSVEAVFRCVRIGPVDEPDAELAYQTAVSIGGHTFKGILRDHGPAD 269
                        55555555555667778***********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.4E-63112268IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016238.2E-26114156IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.6E-18219267IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MAGFSLRGGG GGRGGDRGGD HPIGADSLFL YARGAAAAAA DTAASGGGGG GGIGFQLWHP  60
HQQATAAAVP HTSQFFSSGA VATGVVLGFS SHDGAGGIGG AGGAGAGGGR AGTSCQDCGN  120
NAKKDCTHMR CRTCCRSRGF SCPTHVKSTW VPAAKRRERQ QQLAALFRGA ANSNSAAAAA  180
AAAASKRPRE LVRSLGRLPS ANSAMVTTTT SSGDGGGGRF PPELSVEAVF RCVRIGPVDE  240
PDAELAYQTA VSIGGHTFKG ILRDHGPADD AAVGQLPPSS AEYHHQLTAG QAREGSSPAG  300
SSEAAATVAT SAAVLMDPYP TPIGAFAAGT QFFPHNPRT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.928890.0cell culture| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G097683
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G097683_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0043291e-153AP004329.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1663_H12.
GenBankAP0054631e-153AP005463.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0712G01.
GenBankAP0149621e-153AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008645076.10.0protein SHI RELATED SEQUENCE 1
RefseqXP_008645077.10.0protein SHI RELATED SEQUENCE 1
RefseqXP_008645078.10.0protein SHI RELATED SEQUENCE 1
TrEMBLA0A1D6GW760.0A0A1D6GW76_MAIZE; Protein SHI RELATED SEQUENCE 1
TrEMBLA0A3L6ESY90.0A0A3L6ESY9_MAIZE; Protein SHORT INTERNODES
STRINGGRMZM2G097683_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Representative plantOGRP18721140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.12e-53Lateral root primordium (LRP) protein-related