PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G096064_P01
Common NameLOC103635654, ZEAMMB73_837562
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family LBD
Protein Properties Length: 285aa    MW: 29222.9 Da    PI: 6.4966
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G096064_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260132.22.1e-4153150198
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +CaaCk+lrrkC++dC++apyfp+++p+kf  vh++FGasnv+k+l++l++ +r+da++sl+yeA++r+rdPvyG+vgvi  lq++l+ +++
  GRMZM2G096064_P01  53 PCAACKLLRRKCQPDCMFAPYFPSDNPQKFVHVHRVFGASNVSKILNDLQPFQRQDAVNSLAYEADMRIRDPVYGCVGVICILQRHLSLVRQ 144
                        7******************************************************************************************* PP

             DUF260  93 elallk 98 
                        ela + 
  GRMZM2G096064_P01 145 ELACAT 150
                        *99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.06852153IPR004883Lateral organ boundaries, LOB
PfamPF031959.6E-4253149IPR004883Lateral organ boundaries, LOB
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0020040anatomyleaf base
PO:0020136anatomyear inflorescence
PO:0001052developmental stagevascular leaf expansion stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007101developmental stageLP.09 nine leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MDLPPAERQM AASSAPSSAV PAVSTAPVIT VASPPTGGGG SISGNGGGGG GSPCAACKLL  60
RRKCQPDCMF APYFPSDNPQ KFVHVHRVFG ASNVSKILND LQPFQRQDAV NSLAYEADMR  120
IRDPVYGCVG VICILQRHLS LVRQELACAT YELSKYRQAE AAAASVAVGS HGAAAAAGMA  180
EFVGNAVANC PQTFMDVRHS TAAAAIGGAG GFMQEDNFSM QQMLAMTYEG EGSGAARVDM  240
NGGGGYGFTY SPAAAMGAVE HGAVSGIGAA EQRGTIPEAQ QDRRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-48491567114LOB family transfactor Ramosa2.1
5ly0_B7e-48491567114LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G096064
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation (By similarity). {ECO:0000250}.
UniProtNegative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G096064_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020398467.11e-147LOW QUALITY PROTEIN: LOB domain-containing protein 6
SwissprotA2WXT03e-83LBD6_ORYSI; LOB domain-containing protein 6
SwissprotQ8LQH43e-83LBD6_ORYSJ; LOB domain-containing protein 6
TrEMBLA0A1D6FQ520.0A0A1D6FQ52_MAIZE; Putative LOB domain-containing family protein
STRINGGRMZM2G096064_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22673895
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.46e-50LBD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]