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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM2G095982_P01 |
Common Name | LOB24, LOC103652793, ZEAMMB73_471562 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
LBD |
Protein Properties |
Length: 413aa MW: 43899.2 Da PI: 5.5783 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G095982_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 120.5 | 9.1e-38 | 88 | 184 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92
aCaaCk++rrkC++dC+lapyfpa+q+++f n+h+lFG++++lk+l+++++e dam++l++++++ra+dPv G++ +il+l++ql+ + a
GRMZM2G095982_P01 88 ACAACKYQRRKCNTDCPLAPYFPADQQERFLNAHRLFGVRKILKTLENISPELSADAMATLIFQSDMRAQDPVGGCYHLILSLERQLQIETA 179
7******************************************************************************************* PP
DUF260 93 elall 97
el+++
GRMZM2G095982_P01 180 ELSAM 184
*9876 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 413 aa
Download sequence Send
to blast |
MTSSVSPAAA ASQSQLHITT TGTGTGSTAI ISPSSNQSTS NANARSSSSS SSSPHSASSP 60 PRARGPSTTG GTGSSGGSGS GSGCTNQACA ACKYQRRKCN TDCPLAPYFP ADQQERFLNA 120 HRLFGVRKIL KTLENISPEL SADAMATLIF QSDMRAQDPV GGCYHLILSL ERQLQIETAE 180 LSAMLQTLAL FGQATTTTTM PPDQGGGGTA GLDYTASSNL LHNAQQEVLY ALYKNKHEEA 240 DIVHSDNEVV RHHGGGGHGP NKDDHGRQQH QVLNYFYCNN ATASDDVDNM QQFHFNDSCA 300 AADKVDLTPP AGADEMRHHH QHLDENCQID HKDYFEIKAA AALVDDAFHM RQEVVDVSAE 360 VDMEDIKTVD VNNAGIGGVD IKAMAMNANV VDVTPQMAAE SSHCRLGLGF SSF
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ727770 | 0.0 | KJ727770.1 Zea mays clone pUT5717 LOB transcription factor (LOB24) gene, partial cds. |