PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

MYB

Protein Properties

Length: 321aa MW: 33993.9 Da PI: 4.9423

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G093660_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.3	4.1e-14	21	66	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rWT+eEd+ll +av+++G++ W + ++ gR++ +c rw ++l GRMZM2G093660_P01 21 RRWTPEEDDLLRRAVARHGPRKWPELSVDIP-GRSGRSCHRRWVQHL 66 59***************************.*********9886 PP
2	Myb_DNA-binding	47.3	4.6e-15	72	117	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqk 46 r ++T+eEd +v a +++G++ W+tIar+++ +Rt+ ++k+rw++ GRMZM2G093660_P01 72 RRAFTPEEDAVIVAAQAMYGNK-WTTIARMLPgRTRTDISIKNRWNS 117 678*****************.********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.466	15	66	IPR017930	Myb domain
SuperFamily	SSF46689	1.95E-25	18	115	IPR009057	Homeodomain-like
SMART	SM00717	3.8E-12	19	68	IPR001005	SANT/Myb domain
Pfam	PF00249	6.3E-13	21	66	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-20	22	73	IPR009057	Homeodomain-like
CDD	cd00167	5.48E-13	22	66	No hit	No description
PROSITE profile	PS51294	20.166	67	123	IPR017930	Myb domain
SMART	SM00717	7.7E-12	71	121	IPR001005	SANT/Myb domain
Pfam	PF00249	5.6E-12	72	117	IPR001005	SANT/Myb domain
CDD	cd00167	2.81E-9	74	116	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.4E-19	74	121	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MEGGDGCGSS AAASGSGRVT RRWTPEEDDL LRRAVARHGP RKWPELSVDI PGRSGRSCHR 60 RWVQHLSPGL ERRAFTPEED AVIVAAQAMY GNKWTTIARM LPGRTRTDIS IKNRWNSALQ 120 QHCRAATASA NTAGCALPLR PATTAPVPIP DLMYLNKKLA AAEASLPFPR LEPKDDEDDE 180 DMDETGEDED MNELGDDGSS EVFPPVPAVP LTLTLSLSSG VHGTLASQST FASAATLASA 240 ATLASQSTLA SQSTFASAAA TAGSAMTMRS NLGQDPWLVP ALRLIVSDEV QRKMQEMPQV 300 TAPASRSSAD AADGSAANGQ D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3zqc_A	6e-26	24	153	6	130	MYB3
3zqc_D	6e-26	24	153	6	130	MYB3
3zqc_G	6e-26	24	153	6	130	MYB3
3zqc_J	6e-26	24	153	6	130	MYB3
Search in ModeBase

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G093660

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G093660_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT063950	0.0	BT063950.1 Zea mays full-length cDNA clone ZM_BFc0122P04 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001168553.1	0.0	uncharacterized protein LOC100382333
TrEMBL	C0P6N1	0.0	C0P6N1_MAIZE; MYB transcription factor
STRING	GRMZM2G093660_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP789	38	154
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	8e-37	myb domain protein 73

Link Out ? help Back to Top
Phytozome	GRMZM2G093660_P01
Entrez Gene	100382333