PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G093647_P01
Common NameLOC103630259
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 291aa    MW: 30841.5 Da    PI: 7.1682
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G093647_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-162265347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       +WT+eEdell +av+++G++ W   ++ ++ gR++k+c+ rw  +
  GRMZM2G093647_P01 22 PWTPEEDELLRRAVARHGPRKWPELSADIP-GRCGKSCRRRWVEH 65
                       8*****************************.***********876 PP
2Myb_DNA-binding551.9e-1774114345
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        ++T+eEd  +v a +++G++ W+tIar+++ gRt++++k+rw+
  GRMZM2G093647_P01  74 AFTPEEDAVIVAAQAKHGNK-WATIARMLP-GRTDNSIKNRWN 114
                        79******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.1171566IPR017930Myb domain
SuperFamilySSF466897.4E-3017113IPR009057Homeodomain-like
SMARTSM007179.6E-141968IPR001005SANT/Myb domain
PfamPF002491.5E-152266IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-232273IPR009057Homeodomain-like
CDDcd001673.58E-152266No hitNo description
PROSITE profilePS5129422.63867121IPR017930Myb domain
SMARTSM007171.1E-1271119IPR001005SANT/Myb domain
PfamPF002491.6E-1474114IPR001005SANT/Myb domain
CDDcd001671.37E-1274114No hitNo description
Gene3DG3DSA:1.10.10.602.7E-2174119IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0020040anatomyleaf base
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0001052developmental stagevascular leaf expansion stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MEGGDGCGVS VAASGSRRVN RPWTPEEDEL LRRAVARHGP RKWPELSADI PGRCGKSCRR  60
RWVEHLSPGL EHRAFTPEED AVIVAAQAKH GNKWATIARM LPGRTDNSIK NRWNFALQQQ  120
CRAAAASANT AGCALPLRPA TTAPVPLPHL LDLNKKSTAA EASIPFHRLE PEDDEGMGEG  180
DDGSSEVSPP APLTLTLSLS SGVHGTLASQ STLASAATLA SQSTFASAAT TAGSAMTMRT  240
NLEQNPWLVP ALRLIVSDEV QRKMQEMRQV TAPASRSSAD AADGSAANGQ D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zqc_A4e-30221524131MYB3
3zqc_D4e-30221524131MYB3
3zqc_G4e-30221524131MYB3
3zqc_J4e-30221524131MYB3
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G093647
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G093647_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0639500.0BT063950.1 Zea mays full-length cDNA clone ZM_BFc0122P04 mRNA, complete cds.
GenBankKJ7275060.0KJ727506.1 Zea mays clone pUT5365 MYB transcription factor (MYB93) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008649550.10.0transcription factor CSA
TrEMBLA0A1D6M2P10.0A0A1D6M2P1_MAIZE; Putative MYB DNA-binding domain superfamily protein
STRINGGRMZM2G093647_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.12e-40myb domain protein 73