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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G089995_P01 | ||||||||
Common Name | EREB209, LOC100304148, ZEAMMB73_289765, Zm.21746 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 203aa MW: 20753.4 Da PI: 7.3513 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.2 | 1.3e-20 | 17 | 67 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 + +GVr ++ +gr++AeIrd + r +r++lg+f+t+e+Aa+a++aa++kl+g+ GRMZM2G089995_P01 17 RLRGVRKRP-WGRYAAEIRDpV-----RkARVWLGTFDTPEQAARAYDAAARKLRGP 67 679******.**********44.....55**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.72E-18 | 16 | 75 | No hit | No description |
Pfam | PF00847 | 3.1E-14 | 16 | 66 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.07E-21 | 17 | 74 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.6E-30 | 17 | 80 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.314 | 17 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-9 | 18 | 29 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-29 | 19 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-9 | 40 | 56 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MAPKRPVSAA AAAEQPRLRG VRKRPWGRYA AEIRDPVRKA RVWLGTFDTP EQAARAYDAA 60 ARKLRGPGAA TNYPAPEPTA EALAEAPAAS GSGSAVVYES SSASASASSC SLPLAAPSLD 120 LSLALPAAAA AAEPYQLFAD PAAAAAVTPA LLHFLPPKSE EQQSYSGSSS LSSSSSSVVF 180 DAAPPVGLRL DLNLALPPAE MVM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-21 | 10 | 74 | 7 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.139536 | 0.0 | meristem| ovary |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G089995 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G089995_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU970153 | 0.0 | EU970153.1 Zea mays clone 340982 ethylene-responsive transcription factor 4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001159091.2 | 1e-136 | uncharacterized protein LOC100304148 | ||||
TrEMBL | B6TYT8 | 1e-134 | B6TYT8_MAIZE; AP2-EREBP transcription factor | ||||
STRING | GRMZM2G089995_P01 | 1e-135 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14446 | 10 | 25 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20310.1 | 2e-20 | ethylene response factor 7 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G089995_P01 |
Entrez Gene | 100304148 |
Publications ? help Back to Top | |||
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