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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM2G089501_P01 |
Common Name | LOC100191909 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
bHLH |
Protein Properties |
Length: 514aa MW: 55080.9 Da PI: 7.8416 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G089501_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 55.6 | 9.8e-18 | 230 | 279 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
r +h++ E+rRR++iN++f+ LrellP++ ++K +Ka+ L +++eYI+ Lq
GRMZM2G089501_P01 230 RSKHSATEQRRRSKINDRFQILRELLPHS----DQKRDKATFLLEVIEYIRFLQ 279
889*************************9....9*******************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 514 aa
Download sequence Send
to blast |
MGIQGNKAAT HEHDFLSLYA AAAAKDAPLL LHDSKAPPPS QGNFLLKTHD FLQPLDQKPG 60 APPEPSPLPA SAAESRHQPQ QQVVVANQHA LPLPGGVGTF SISPAPVSVA LPAAVVKSEP 120 PFVLWGQPAA TLHPGARGHQ QQWALPFAGA GQVRLPPQQA PPDRKGRGGA GGGVMESGSR 180 SSGGAGFDDD DGLTTRREVS SSLQDLTVRV DRKGGSCSDG GTDQRPNTPR SKHSATEQRR 240 RSKINDRFQI LRELLPHSDQ KRDKATFLLE VIEYIRFLQE KVQKYEATFP EWNQENAKML 300 PWSNMYFRSF WKNAQSKGQI SGDSPPDPSH FMRNGSSPGS NFTGKLDDNH NIVTSAAASG 360 AQDQVETDHM ASGCYRSAET TANFTNNAMS QSQPQWTGPS PVDDSAVNSE TLNNQQLVID 420 EGTIRVSSNY SQELLNSLTH ALQSSGVDLS QANISVQINM GKRAAKRPAA GVSSNSKEPA 480 DPASSNELGH QLTLSGAGAD CLSHATKRHK RSNS
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Expression -- UniGene
? help Back to Top |
UniGene ID |
E-value |
Expressed in |
Zm.118312 | 0.0 | ear| endosperm| glume| meristem| ovary| pericarp| pollen| root| shoot |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT053989 | 0.0 | BT053989.1 Zea mays full-length cDNA clone ZM_BFc0097D18 mRNA, complete cds. |