PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G089361_P01 | ||||||||
Common Name | LOC103625824, Zm.143980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TCP | ||||||||
Protein Properties | Length: 381aa MW: 39053.2 Da PI: 10.1628 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 122.1 | 6.5e-38 | 60 | 186 | 2 | 128 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssgka 90 g+kdrhsk++T++g RdRRvRls+++a++f+dLqd+LGfd++sk+ieWL+++a +ai++l+++ ++a ++ a+ + ++++ GRMZM2G089361_P01 60 SGGKDRHSKVYTAKGIRDRRVRLSVPTAIQFYDLQDRLGFDQPSKAIEWLINAAAAAIDKLPEL-DPAA-FAalpA--PGDADAAGKDKQQQ 147 689*************************************************************.4444.333442..33333333333344 PP TCP 91 aksaakskksqksaasalnlak.esrakarararertre 128 +++a s+ s++s+ s l+l++ +sr a+ar re t GRMZM2G089361_P01 148 GSKSAGSSTSETSKGSELSLSRsDSRGGASARDREVTVA 186 455556666777777779999999********9997655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.6E-34 | 61 | 181 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.343 | 62 | 120 | IPR017887 | Transcription factor TCP subgroup |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MEAAAVGAGA PGRSQQQGSK RGRGGAVRGS EAEAAWGQPP PPPPPLGPGA GSRIYRVRAS 60 GGKDRHSKVY TAKGIRDRRV RLSVPTAIQF YDLQDRLGFD QPSKAIEWLI NAAAAAIDKL 120 PELDPAAFAA LPAPGDADAA GKDKQQQGSK SAGSSTSETS KGSELSLSRS DSRGGASARD 180 REVTVASTSA QAASFTELLT GVASAGAISA AEHRQSWHHQ PNVSAAAAGC VGIAHNGKGA 240 HGLSTHAFSG PAAAKFGSAP PFGLVPAQPF NFTSPIEMPH FSLGQDTLAA SSAAAGDYSL 300 GFSMSSGFLG ASRGTLQSNS QSNFSGHHHH QLQRLDGPLL FGHVHGAAVA HPASENQLTS 360 SAALQLWDGL RHSGMKEKSK N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-26 | 67 | 121 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-26 | 67 | 121 | 1 | 55 | Putative transcription factor PCF6 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.80385 | 0.0 | shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G089361 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G089361_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956595 | 0.0 | EU956595.1 Zea mays clone 1567541 TCP family transcription factor containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008644443.1 | 0.0 | transcription factor PCF6 | ||||
Swissprot | Q10CE8 | 1e-107 | PCF6_ORYSJ; Transcription factor PCF6 | ||||
TrEMBL | A0A1D6GG32 | 0.0 | A0A1D6GG32_MAIZE; Transcription factor TCP2 | ||||
STRING | GRMZM2G089361_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3094 | 32 | 71 |
Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30210.2 | 1e-29 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G089361_P01 |
Entrez Gene | 103625824 |