PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G088427_P01 | ||||||||
Common Name | LOC103643731 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | B3 | ||||||||
Protein Properties | Length: 337aa MW: 38844.2 Da PI: 10.565 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62.2 | 8.2e-20 | 36 | 117 | 12 | 99 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++rlv+p kfa+++ gk e+ ++le++ g +++v++ ++ gr+++++GWk+Fv+a++Lk D +vFk+dg +++ ++v +f+ GRMZM2G088427_P01 36 FHKRLVIPVKFAKKFRGKVER--NIKLESLGGYTFDVQV--AQNLGRIMFQSGWKSFVSAHDLKMFDLLVFKYDG-MSR-MKVLIFDP 117 4678***********777555..6***************..********************************98.444.69999885 PP | |||||||
2 | B3 | 39.9 | 7.5e-13 | 268 | 331 | 37 | 99 |
EEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 37 tledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++ + +g+sWev l +rk +g+ l+ GW eF+++n+L+ gD+++F+ ++++ +++v+++r+ GRMZM2G088427_P01 268 VILQCHGKSWEVILEVRKDQGEsKRLRIGWAEFARDNNLQLGDICLFEPLKTMKYTMNVHIVRR 331 556679********98666666699***********************9999*********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.75E-22 | 22 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.8E-23 | 23 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.421 | 25 | 118 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.15E-20 | 26 | 116 | No hit | No description |
SMART | SM01019 | 3.0E-12 | 28 | 118 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-17 | 36 | 116 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.2E-19 | 229 | 331 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.75E-17 | 229 | 330 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.74E-12 | 232 | 330 | No hit | No description |
PROSITE profile | PS50863 | 11.815 | 235 | 332 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.4E-5 | 236 | 332 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.9E-11 | 247 | 331 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MRKPSNGCKE RDVIYHRNDH TDDNGKHFFK ILIGDFHKRL VIPVKFAKKF RGKVERNIKL 60 ESLGGYTFDV QVAQNLGRIM FQSGWKSFVS AHDLKMFDLL VFKYDGMSRM KVLIFDPSGC 120 EKVPPFFVTK NAMSGGRKRE EPQEPLDISS SYADLPMKTP ETKKKARKQR DRSRINISPC 180 RSISNSSGGM RSSEDDEAHS VPSCILPRGT ILDSMQRRKV KERLRAICSE IPIYVFVVKK 240 SNIFGRSQDM VFSRKYPDVC LPFKSGAVIL QCHGKSWEVI LEVRKDQGES KRLRIGWAEF 300 ARDNNLQLGD ICLFEPLKTM KYTMNVHIVR RRVRSGK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.33072 | 0.0 | embryo| meristem| ovary| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G088427 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G088427_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008665125.1 | 0.0 | putative B3 domain-containing protein Os03g0621600 | ||||
Refseq | XP_020402857.1 | 0.0 | putative B3 domain-containing protein Os03g0621600 | ||||
TrEMBL | A0A317Y8C5 | 0.0 | A0A317Y8C5_MAIZE; Putative B3 domain-containing protein | ||||
STRING | GRMZM2G088427_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2901 | 29 | 85 |
Representative plant | OGRP5872 | 4 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 5e-29 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G088427_P01 |
Entrez Gene | 103643731 |