PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G088413_P01 | ||||||||
Common Name | LOC103643730, Zm.149420 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | B3 | ||||||||
Protein Properties | Length: 332aa MW: 38012.1 Da PI: 10.4421 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62.1 | 9e-20 | 36 | 117 | 12 | 99 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + rlv+p kfa+++ gk e+ +tle++ g +++v++ ++ gr+v+++GW++Fv+a++Lk D +vFk+dg +++ ++v vf+ GRMZM2G088413_P01 36 FHERLVIPVKFAKNFRGKIER--SITLESLGGCTFDVQV--AQNLGRIVFQSGWESFVSAHDLKMCDLLVFKYDG-MSR-MKVLVFDP 117 4678********999777555..5***************..********************************98.444.68888875 PP | |||||||
2 | B3 | 41.4 | 2.5e-13 | 264 | 330 | 36 | 99 |
EEEEETTS-EEEEEE....EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 36 ltledesgrsWevkliy..rkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + + +g+sW+v +++ +k +g+ l++GW +F+++n L+ gD+++F+ ++++ +++v+++rk GRMZM2G088413_P01 264 ALILQCHGKSWQVMYCIevWKDRGEsKRLRNGWAQFARDNYLQLGDICLFEPLKTKKCTMNVHIIRK 330 3445669********8888666665599***********************88888888*****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-22 | 21 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-22 | 24 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.337 | 25 | 118 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.53E-21 | 26 | 116 | No hit | No description |
SMART | SM01019 | 7.2E-11 | 28 | 118 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.6E-17 | 37 | 116 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.0E-18 | 225 | 331 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.42E-17 | 226 | 331 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.58E-14 | 229 | 329 | No hit | No description |
SMART | SM01019 | 0.15 | 231 | 331 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.674 | 232 | 331 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.1E-12 | 243 | 330 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MRKPSKGRKE RDVIYHRNDH SDDRGKHFFK ILIGEFHERL VIPVKFAKNF RGKIERSITL 60 ESLGGCTFDV QVAQNLGRIV FQSGWESFVS AHDLKMCDLL VFKYDGMSRM KVLVFDPSGC 120 EKVPPFFVTK NAMSGGRKRE GPLDISSSDA NLPMKTPETK KKAWKQRDRS RISIRSSRSL 180 SSSSGGMTAS EDDEAHSVPS YVLPRHTSLD TMQKRKVKER LQAICSEIPI YVLVVKNTNI 240 SGRSRAMVFS RKYPDVCLPS KSGALILQCH GKSWQVMYCI EVWKDRGESK RLRNGWAQFA 300 RDNYLQLGDI CLFEPLKTKK CTMNVHIIRK KE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.33072 | 1e-168 | embryo| meristem| ovary| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G088413 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G088413_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008665124.1 | 0.0 | putative B3 domain-containing protein Os03g0621600 | ||||
TrEMBL | A0A317Y8C5 | 0.0 | A0A317Y8C5_MAIZE; Putative B3 domain-containing protein | ||||
STRING | GRMZM2G088413_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2901 | 29 | 85 |
Representative plant | OGRP5872 | 4 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 2e-29 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G088413_P01 |
Entrez Gene | 103643730 |