PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G088189_P01
Common Nameumc2063, Zm.13877
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 308aa    MW: 33537.4 Da    PI: 8.338
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G088189_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.1e-161562148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g W++eEd++l d++ ++G g+W++++++ g+ R +k+c++rw +yl
  GRMZM2G088189_P01 15 KGLWSPEEDQRLRDYILKHGLGCWSAVPAKAGLQRNGKSCRLRWINYL 62
                       678*******************************************97 PP
2Myb_DNA-binding51.91.8e-1668113148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg +++eE++  +d+ ++lG++ W+ Ia +++ gRt++++k++w++yl
  GRMZM2G088189_P01  68 RGMFSQEEEDVVIDLQAKLGNK-WSQIAMHLP-GRTDNEVKNYWNSYL 113
                        788*******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.461062IPR017930Myb domain
SuperFamilySSF466898.07E-2912109IPR009057Homeodomain-like
SMARTSM007171.6E-111464IPR001005SANT/Myb domain
PfamPF002492.4E-141562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-221669IPR009057Homeodomain-like
CDDcd001671.14E-101862No hitNo description
PROSITE profilePS5129425.4963117IPR017930Myb domain
SMARTSM007171.3E-1467115IPR001005SANT/Myb domain
PfamPF002492.0E-1468113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-2570117IPR009057Homeodomain-like
CDDcd001674.15E-1271113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGCRSCDKPK MNYRKGLWSP EEDQRLRDYI LKHGLGCWSA VPAKAGLQRN GKSCRLRWIN  60
YLRPGLKRGM FSQEEEDVVI DLQAKLGNKW SQIAMHLPGR TDNEVKNYWN SYLKKRVMQQ  120
AQGASSNSSP KSPPELTSMS TTADLSSMSM PMPMSMPMHQ RHHVKNNSGG GSTTTSHDQQ  180
DDANISGSRA ALSAPPPPPL AQQPFEHQAA RSFVFSDWAP ESYSLSTHWP AATSTSGNVT  240
PSHGSAAAFG DQMSGTYGAG GLPPPHQDHH HSAAPATTGI AGSGYFDLLN MGDIYGGFSS  300
TNNDDLLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-25911723128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G088189
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G088189_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3686641e-139AK368664.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2077L03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008645164.10.0transcription factor MYB8
TrEMBLA0A1D6GYL10.0A0A1D6GYL1_MAIZE; R2R3MYB-domain protein
STRINGGRMZM2G088189_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122962735
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.11e-54myb domain protein 86
Publications ? help Back to Top
  1. Rabinowicz PD,Braun EL,Wolfe AD,Bowen B,Grotewold E
    Maize R2R3 Myb genes: Sequence analysis reveals amplification in the higher plants.
    Genetics, 1999. 153(1): p. 427-44
    [PMID:10471724]