PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G087804_P03
Common NameGLK13, LOC542493
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 461aa    MW: 49254.8 Da    PI: 7.2183
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G087804_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.52.5e-27184238156
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                        k +++WtpeLH+rFv+aveqL G++kA+P++ile+m+ ++Lt+++++SHLQkYR++
  GRMZM2G087804_P03 184 KVKVDWTPELHRRFVQAVEQL-GIDKAVPSRILEIMGTDCLTRHNIASHLQKYRSH 238
                        5689*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.158181240IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-26182241IPR009057Homeodomain-like
SuperFamilySSF466891.45E-17183241IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-26184238IPR006447Myb domain, plants
PfamPF002495.4E-7187236IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0009658Biological Processchloroplast organization
GO:0009910Biological Processnegative regulation of flower development
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0025541anatomybundle sheath cell
PO:0025589anatomyleaf lamina tip
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MLEVSTLRGP TSSGSKAEQH CGGGGGFVGD HHVVFPTSGD CFAMVDDNLL DYIDFSCDVP  60
FFDADGDILP DLEVDTTELL AEFSSTPPAD DLLAVAVFGA DDQPAAAVAQ EKPSSSLEQT  120
CGDDKGVAVA AARRKLQTTT TTTTTEEEDS SPAGSGANKS SASAEGHSSK KKSAGKNSNG  180
GKRKVKVDWT PELHRRFVQA VEQLGIDKAV PSRILEIMGT DCLTRHNIAS HLQKYRSHRK  240
HLMAREAEAA TWAQKRHMYA PPAPRTTTTT DAARPPWVVP TTIGFPPPRF CRPLHVWGHP  300
PPHAAAAEAA AATPMLPVWP RHLAPPRHLA PWAHPTPVDP AFWHQQYSAA RKWGPQAAAV  360
TQGTPCVPLP RFPVPHPIYS RPAMVPPPPS TTKLAQLHLE LQAHPSKESI DAAIGDVLVK  420
PWLPLPLGLK PPSLDSVMSE LHKQGVPKIP PAAATTTGAT G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-15181236257ARR10-B
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G087804
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:11340194}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}.
Function -- GeneRIF ? help Back to Top
  1. Galpha gene COMPACT PLANT2 functions in CLAVATA signalling to control shoot meristem size
    [PMID: 24025774]
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00022PBMTransfer from AT2G20570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G087804_P03
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3185790.0AF318579.1 Zea mays putative transcription factor GOLDEN 2 mRNA, complete cds.
GenBankBT0628380.0BT062838.1 Zea mays full-length cDNA clone ZM_BFb0374G22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105513.10.0golden plant 2
SwissprotQ5NAN51e-112GLK2_ORYSJ; Probable transcription factor GLK2
TrEMBLQ9FUL90.0Q9FUL9_MAIZE; G2-like transcription factor
STRINGGRMZM2G087804_P030.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Representative plantOGRP28401529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.11e-59GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Rossini L,Cribb L,Martin DJ,Langdale JA
    The maize golden2 gene defines a novel class of transcriptional regulators in plants.
    Plant Cell, 2001. 13(5): p. 1231-44
    [PMID:11340194]
  2. Cribb L,Hall LN,Langdale JA
    Four mutant alleles elucidate the role of the G2 protein in the development of C(4) and C(3) photosynthesizing maize tissues.
    Genetics, 2001. 159(2): p. 787-97
    [PMID:11606553]
  3. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  4. Bommert P,Je BI,Goldshmidt A,Jackson D
    The maize Gα gene COMPACT PLANT2 functions in CLAVATA signalling to control shoot meristem size.
    Nature, 2013. 502(7472): p. 555-8
    [PMID:24025774]