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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM2G087741_P01 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
TALE |
Protein Properties |
Length: 295aa MW: 32493.5 Da PI: 5.6022 |
Description |
TALE family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G087741_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 28.7 | 2.2e-09 | 229 | 262 | 22 | 55 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55
+yp++e++ +LA+ +gL+ +q+ +WF N+R ++
GRMZM2G087741_P01 229 WPYPTEEDKVRLAAMTGLDPKQINNWFINQRKRH 262
69*****************************885 PP
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2 | ELK | 33.2 | 1.1e-11 | 182 | 203 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22
ELK++Ll+KYsg+L+ L++EF+
GRMZM2G087741_P01 182 ELKEMLLKKYSGCLSRLRSEFL 203
9********************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 295 aa
Download sequence Send
to blast |
MEDLYSIHPG ISRVVGGAAS EASVAGAGAG GPSPSDLTEL MKAQIASHPR YPSLLSAYIE 60 CRKVGAHPHV TSLLEEVSRE RRPDAGAGEI GVDPELDEFM DAYCRVLVRY KEELTRPFDE 120 AASFLSSIQA QLSDLCSGGS SPAATATHSD DMMGSSEDEQ CSGDTDVPDM GQEHSSHLGD 180 HELKEMLLKK YSGCLSRLRS EFLKKRKKGK LPKDARTVLL EWWNTHYRWP YPTEEDKVRL 240 AAMTGLDPKQ INNWFINQRK RHWKPSEDMR FALMEGVAGG SSGTTLYFDT GTIGP
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 197 | 206 | LRSEFLKKRK |
2 | 203 | 207 | KKRKK |
Expression -- UniGene
? help Back to Top |
UniGene ID |
E-value |
Expressed in |
Zm.436 | 0.0 | ear| meristem| root| shoot| tassel |
Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Highly expressed in the early globular stage embryo before 2 days after pollination (DAP), but not in the endosperm. At 3 and 4 DAP, expression is restricted to the region around or just below the center of the ventral side of the embryo, where the shoot apex subsequently arises. During the transition to the shoot apex differentiation stage, expression is divided between the upper and basal regions of the shoot area, and the notch between the first leaf primordium and epiblast, respectively. When the first leaf primordia is evident, expression is localized to the notches between the shoot apical meristem (SAM) and the first leaf primordium and the putative second leaf primordium. Expressed uniformly in the inflorescence meristem, but after the transition from inflorescence to the floral phase, located specifically in the notches between the floral meristem and glume primordia. At later stages of flower development, uniformly expressed throughout the corpus of the meristem, and in the notches between glume primordia, but less well defined than in the previous stage. {ECO:0000269|PubMed:10488233}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF100455 | 0.0 | AF100455.1 Zea mays knotted class 1 homeodomain protein liguleless3 (lg3) mRNA, complete cds. |
Publications
? help Back to Top |
- Kaplinsky NJ,Braun DM,Penterman J,Goff SA,Freeling M
Utility and distribution of conserved noncoding sequences in the grasses. Proc. Natl. Acad. Sci. U.S.A., 2002. 99(9): p. 6147-51 [PMID:11972021] - Bauer P, et al.
Regulation and a conserved intron sequence of liguleless3/4 knox class-I homeobox genes in grasses. Planta, 2004. 219(2): p. 359-68 [PMID:15034715] - Park SH, et al.
A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice. Planta, 2007. 227(1): p. 1-12 [PMID:17624547] - Muehlbauer GJ, et al.
Ectopic expression of the maize homeobox gene liguleless3 alters cell fates in the leaf. Plant Physiol., 1999. 119(2): p. 651-62 [PMID:9952462]
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