PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G087059_P02
Common NameZm.125688
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 445aa    MW: 47675.1 Da    PI: 9.9407
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G087059_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.5e-20218267255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa a+++a+++++g
  GRMZM2G087059_P02 218 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAAIAYDEAALRFKG 267
                        7********.**********94....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.0E-33217276IPR001471AP2/ERF domain
PROSITE profilePS5103224.711218275IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-22218276IPR016177DNA-binding domain
CDDcd000183.60E-30218276No hitNo description
PfamPF008472.3E-13218267IPR001471AP2/ERF domain
SMARTSM003804.8E-38218281IPR001471AP2/ERF domain
PRINTSPR003672.4E-11219230IPR001471AP2/ERF domain
PRINTSPR003672.4E-11241257IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0020040anatomyleaf base
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MRISLRVLIS SELGTSLCTA APSLARASVR KSKSSALSLT HARIDRSSST HRRRRQINGQ  60
LTKVDPRRRH GKRPLPADEE EEEEEELPPP PAKYEQLDQE EKHHVVVSQL QAGATFSGGR  120
GSSSSSVAGP SPEAYAQYYY SARADHDASA VASALAHVIR ASPDQLPPQQ AACLYGAAGA  180
PVLRQGEGDH PQPQAAAHHH PGGHVAAEEE QGAGLRRHYR GVRQRPWGKW AAEIRDPKKA  240
ARVWLGTFDT AEDAAIAYDE AALRFKGTKA KLNFPERVQG RTDLGFVVTR GIPDHHRHPR  300
AAAVNLAAMP QAQAQPHLQH GRPTVMPYPY PYPDLMQYAQ LLQGGRGGGD HAAAVQQQLM  360
MMGGRGGNLP FSFSPPSSWS APPQILDFSA RQLITQPGPP SSPAAPGGAA PSTPSSTTTA  420
SSPSASASGS AWPYGGEHHR NKKDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-26217279467ATERF1
3gcc_A5e-26217279467ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1256880.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G087059
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G087059_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9436370.0EU943637.1 Zea mays clone 1661619 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008669488.10.0uncharacterized protein LOC103646542
TrEMBLA0A3L6FTB91e-173A0A3L6FTB9_MAIZE; Uncharacterized protein (Fragment)
STRINGGRMZM2G087059_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.12e-30ERF family protein