PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G086949_P01 | ||||||||
Common Name | ZEAMMB73_806966, Zm.100279 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ARF | ||||||||
Protein Properties | Length: 958aa MW: 105292 Da PI: 6.443 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 70.2 | 2.7e-22 | 143 | 257 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT...................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 f+k lt sd++++g +++p++ ae+ ++++++ ++l+++d++ + W++++iyr++++r++lt+GW+ Fv a++ GRMZM2G086949_P01 143 FCKNLTASDTSTHGGFSVPRRAAEKLfpqlvrasaqtrvfnpqdySMQPPN-QELIVRDLHDNMWTFRHIYRGQPKRHLLTTGWSLFVGAKR 233 89*********************999*******999999999998555544.49************************************** PP --TT-EEEEEE-SSSEE..EEEEE-S CS B3 74 LkegDfvvFkldgrsefelvvkvfrk 99 Lk+gD+v+F ++++ +l+v+v+r+ GRMZM2G086949_P01 234 LKAGDSVLFI--RDEKSQLLVGVRRA 257 **********..4577778*****97 PP | |||||||
2 | Auxin_resp | 110.8 | 1.4e-36 | 282 | 364 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaas++ F+++YnPr+s+s Fv+++++++ka++ + svGmRf m+fete+ss+rr++G +vg+sd+dp+rWpnSkWr+L+ GRMZM2G086949_P01 282 AAHAASSGGSFTIYYNPRTSPSPFVIPLARYNKATYLQPSVGMRFAMMFETEESSKRRCTGAIVGISDYDPMRWPNSKWRNLQ 364 79*******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.02E-41 | 133 | 285 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.7E-38 | 136 | 270 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.24E-19 | 142 | 256 | No hit | No description |
SMART | SM01019 | 1.2E-21 | 143 | 258 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.3E-20 | 143 | 257 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.73 | 143 | 258 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.1E-32 | 282 | 364 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 7.1E-9 | 853 | 942 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 22.809 | 855 | 939 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 4.32E-8 | 874 | 934 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0004006 | anatomy | mesophyll cell | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0025589 | anatomy | leaf lamina tip | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 958 aa Download sequence Send to blast |
MASSQEKATS GVLRNAAALL DEMQLMGETQ GAKKVINSEL WHACAGPLVC LPQRGSLVYY 60 FPQGHSEQVA ATTKKIPNSR IPNYPSLPPQ LLCQVHNITL HADKETDEIY CQMTLQPLHS 120 ETDVFPIPTL GAYTKSKHPT EYFCKNLTAS DTSTHGGFSV PRRAAEKLFP QLVRASAQTR 180 VFNPQDYSMQ PPNQELIVRD LHDNMWTFRH IYRGQPKRHL LTTGWSLFVG AKRLKAGDSV 240 LFIRDEKSQL LVGVRRATRQ QPALSSSVLS TDSMHIGVLA AAAHAASSGG SFTIYYNPRT 300 SPSPFVIPLA RYNKATYLQP SVGMRFAMMF ETEESSKRRC TGAIVGISDY DPMRWPNSKW 360 RNLQVEWDEH GYGERPERVS IWDIETPENM VFSSPLNSKR QCLPSYGVPG LQIGSVNMSS 420 IPRAQGNPIG NLQHMPGMGS ELALLLLNQS GQNIGSPIAC QQSSFSSIIQ NAKHSYFPPK 480 TFGASTASMK QESMPSTEAQ PQLNALGIQR SDRVSCEVQT ASDSNPAQEM SVKPRAPRST 540 DSHSSQSISD QNSKGEPRTK TRRSKKSSYQ KTISDKSELC SVPSQICDDK KHGSEPRLAD 600 CEAEQATCGN NEESSGALTH GDFAGELQVQ QQVEQHELLA PPKIESSKSP DGGKSVSSFP 660 NQGCIPQFFE GLDWMIPPSY YQDSNGIQSV TASDNIFNPS EGIPSTMNAD ALDAFQTSCL 720 SECFPSSIQE FIGSPDINTL AFMSPEMQQL DAGSNLPSTS NSYVQMSFSE ESHSASLSGL 780 HMEAIHINSS SCSQPLATGS FDAGAFPKLS NIRECQPLPL QEIHTSSMGT PSCSMDAAAE 840 YGTDRSAKQM KPPVRTYTKV QKLGSVGRCI DVTRFRDYHE LRSAIACMFG LQGKLEHPGS 900 SDWKLVYVDY ENDVLLVGDD PWEEFINCVR CIRILSPSEV QQMSENGVHV LNDCIQIA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 17 | 389 | 31 | 392 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.100279 | 0.0 | endosperm| meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G086949 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G086949_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM004544 | 0.0 | HM004544.1 Zea mays auxin response factor 29 (ARF29) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008663701.1 | 0.0 | auxin response factor 11 isoform X1 | ||||
Refseq | XP_008663702.1 | 0.0 | auxin response factor 11 isoform X1 | ||||
Swissprot | Q01K26 | 0.0 | ARFK_ORYSI; Auxin response factor 11 | ||||
Swissprot | Q8S983 | 0.0 | ARFK_ORYSJ; Auxin response factor 11 | ||||
TrEMBL | A0A1D6JH51 | 0.0 | A0A1D6JH51_MAIZE; Auxin response factor | ||||
STRING | GRMZM2G086949_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8673 | 32 | 41 |
Representative plant | OGRP8260 | 12 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G086949_P01 |
Publications ? help Back to Top | |||
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