PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G084264_P01
Common NameLOC100280370
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 239aa    MW: 24445.8 Da    PI: 4.4248
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G084264_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.21.6e-162169355
                AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       ykGVr ++ +g+Wv+e+r p   g+++r++lg++ tae Aa+a++aa ++l+g
  GRMZM2G084264_P01 21 YKGVRMRS-WGSWVSEVRAP---GQKTRIWLGSHATAEAAARAHDAALLCLRG 69
                       9****998.*******9998...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.1122077IPR001471AP2/ERF domain
SMARTSM003805.8E-302083IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-172079IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.8E-282077IPR001471AP2/ERF domain
CDDcd000181.55E-142177No hitNo description
PRINTSPR003674.6E-82132IPR001471AP2/ERF domain
PfamPF008471.8E-102169IPR001471AP2/ERF domain
PRINTSPR003674.6E-84359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MVKTAASSSS DDAAAAKRRT YKGVRMRSWG SWVSEVRAPG QKTRIWLGSH ATAEAAARAH  60
DAALLCLRGS AADLNFPLRL PFDLPPAATM SPKAIQRVAA AAASASSSSS CGGGGGLRAP  120
PPFAPRAENN GTSACSDGDG DATPASSTTS SPTSHADDVS SPDSTVSSAG DVDYYTSLAD  180
IDAFFQSPKC VVDYALMDPC SAFFAPDSTA ADDDGGCCWA WEEDGGGIAL WSFSATLDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-141680166ATERF1
3gcc_A6e-141680166ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.187730.0meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G084264
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G084264_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0561020.0BT056102.1 Zea mays full-length cDNA clone ZM_BFb0016N07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146768.11e-168uncharacterized LOC100280370
TrEMBLA0A1D6LV991e-168A0A1D6LV99_MAIZE; Putative AP2/EREBP transcription factor superfamily protein
TrEMBLA0A3L6E9P81e-168A0A3L6E9P8_MAIZE; Ethylene-responsive transcription factor ERF013
STRINGGRMZM2G084264_P011e-169(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31973469
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77640.13e-23ERF family protein