PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G083717_P01
Common NameWRKY10, Zm.127085
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 380aa    MW: 40887.7 Da    PI: 7.153
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G083717_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.8e-31191249259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+ eHnh+
  GRMZM2G083717_P01 191 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCMARKQVERSRSDPNMLVITYTAEHNHP 249
                        699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.247185251IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-30188251IPR003657WRKY domain
SuperFamilySSF1182901.7E-26189251IPR003657WRKY domain
SMARTSM007744.3E-38190250IPR003657WRKY domain
PfamPF031068.4E-26192249IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MDSMEDAVSG TAAQGDLAEV VARAGAMAAA ASHHHHRRPP SPAAADHGHI VSAARATARS  60
QIMLVPAAAC YDDETRPAAA CGDAVMFDAP SSSMAAAVGP YHHLSSSSAA LAPAHGGYWL  120
PPQQISQEHA RDGGLDEPPV VTRISPVTTP PPPSHHHQIM NRKNEVKKVV CIPALPPPAS  180
SRPGGGEVIP SDLWAWRKYG QKPIKGSPYP RGYYRCSSSK GCMARKQVER SRSDPNMLVI  240
TYTAEHNHPW PMQRNVLAGY SRPHTATHMS SNCKKKKNSC SVEPTSSWPT TTTSSPSSKN  300
GNYECQQMTN MTMEENAAAG YVAYAIDDEE CAAMHQPINC GSVQPSADEV FAELEELEPT  360
TSPVNANIFS RGVTYEWHKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-24163251279Disease resistance protein RRS1
5w3x_D3e-24163251279Disease resistance protein RRS1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G083717
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G083717_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0687530.0BT068753.1 Zea mays full-length cDNA clone ZM_BFb0381C04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008677423.10.0WRKY transcription factor 14 isoform X1
SwissprotO647472e-52WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBLC0PKD40.0C0PKD4_MAIZE; Putative WRKY transcription factor 14
STRINGGRMZM2G083717_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134662832
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.16e-53WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]