PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G083504_P02
Common NameLOC100216628, LOC100383077
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 350aa    MW: 36909.4 Da    PI: 5.4724
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G083504_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.98.6e-09166213455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  GRMZM2G083504_P02 166 SHSLAERVRREKISQRMKFLQDLVPGC----NKVVGKALMLDEIINYVQSLQ 213
                        8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.80E-10160217No hitNo description
SuperFamilySSF474596.8E-17160231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.123162212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-17162230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-6166213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-9168218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDSDYIASLL MGSSAPALSF AALDAGFLDT LRGGGGGGLF GVPAEAGCGG GSPEGSSVSD  60
PAWARARDYG NARKRKAPPT GSAGGKEACL SKVAEAKGPD GKRCRVVGAS DSPVKPKEEE  120
EEAAASDALV EVKAQKKGKG KSSKPAVEPP KDYVHVRARR GQATDSHSLA ERVRREKISQ  180
RMKFLQDLVP GCNKVVGKAL MLDEIINYVQ SLQQQVEFLS MKLATVNPEL DFSNLSTLLH  240
KDMYQQPCGG PSASSVFPLE SAGAAFPFCE QADLFHSFGS GGSGSGSGME DQCSLSLLLD  300
TALPHAASPQ FAFQKQQRDL WEDGLQHALP TPTTGSEQRQ EEDGLLVPDL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1000280.0ear
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G083504
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G083504_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0661260.0BT066126.1 Zea mays full-length cDNA clone ZM_BFc0002I08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169219.10.0uncharacterized protein LOC100216628
SwissprotQ9CAA94e-51BH049_ARATH; Transcription factor bHLH49
TrEMBLC0PCV70.0C0PCV7_MAIZE; Transcription factor bHLH62
STRINGGRMZM2G083504_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.23e-53bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]