PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G082227_P01 | ||||||||
Common Name | ABI8, LOC103631056, Zm.31375 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | B3 | ||||||||
Protein Properties | Length: 327aa MW: 36033.4 Da PI: 10.0197 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 97.4 | 8.9e-31 | 38 | 142 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld. 85 f+kv tpsdv+k++rlv+pk++ae++ + ++ l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F + GRMZM2G082227_P01 38 FDKVVTPSDVGKLNRLVIPKQHAERYfpldaaA--NDKGLLLSFEDRAGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRGv 127 89*************************999643..346779************************************************665 PP SS.SEE..EEEEE-S CS B3 86 gr.sefelvvkvfrk 99 g+ +++l++ ++r+ GRMZM2G082227_P01 128 GEaARGRLFIDWRRR 142 8889999**999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.7E-41 | 28 | 144 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.18E-28 | 35 | 140 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.81E-26 | 36 | 123 | No hit | No description |
Pfam | PF02362 | 5.7E-28 | 38 | 142 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.4E-21 | 38 | 143 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.24 | 38 | 143 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MEFTAPPPAT RSGGGEERAA AEHHQQQQQA TVEKEHMFDK VVTPSDVGKL NRLVIPKQHA 60 ERYFPLDAAA NDKGLLLSFE DRAGKPWRFR YSYWNSSQSY VMTKGWSRFV KEKRLDAGDT 120 VSFGRGVGEA ARGRLFIDWR RRPDPPVVHH QYHHHRLPLP SAVVPYAPWA AAAHAHHHHY 180 PAAGVGAART TTTTTTTVLH HLPPSPSPLY LDTRRRHVGY DAYGAGTRQL LFYRPHQQPS 240 TTVMLDSVPV RLPPTPGQHA EPPPPAVASS ASKRVRLFGV NLDCAAAAGS EEENVGGWRT 300 SAPPTQQASS SSSYSSGKAR CSLNLDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 2e-63 | 33 | 143 | 3 | 114 | B3 domain-containing transcription factor NGA1 |
5os9_B | 2e-63 | 33 | 143 | 3 | 114 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G082227 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G082227_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727001 | 0.0 | KJ727001.1 Zea mays clone pUT3977 ABI3VP1 transcription factor (ABI8) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008650288.1 | 0.0 | B3 domain-containing protein Os03g0120900 | ||||
Swissprot | Q8LMR9 | 1e-114 | Y3209_ORYSJ; B3 domain-containing protein Os03g0120900 | ||||
TrEMBL | A0A060CZ68 | 0.0 | A0A060CZ68_MAIZE; ABI3VP1 transcription factor (Fragment) | ||||
TrEMBL | A0A317Y3I0 | 0.0 | A0A317Y3I0_MAIZE; B3 domain-containing protein | ||||
STRING | GRMZM2G082227_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP583 | 37 | 168 |
Representative plant | OGRP365 | 16 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 7e-60 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G082227_P01 |
Entrez Gene | 103631056 |
Publications ? help Back to Top | |||
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