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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM2G081816_P01 |
Common Name | LOC100192921 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
bHLH |
Protein Properties |
Length: 481aa MW: 48730.4 Da PI: 7.2859 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G081816_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 23.1 | 1.4e-07 | 381 | 421 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
r+RR+ri +++ L++l+P a K++ a++L +A Y++ L
GRMZM2G081816_P01 381 ARQRRERISDRLRVLQKLVPGgA------KMDTASMLDEAASYLRFL 421
69******************966......***************998 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 481 aa
Download sequence Send
to blast |
MDHNLSDMTI LSEHAWGDEA GAVLLSPPEV GSVIEGGGGM TVLERLVLDE ALAAAILELQ 60 AIQQAAPGPA SCAGKQQLAA GGGGGVVGAE AAVAFPSMMA MAMAAPTPAY ADADVDAGVL 120 QRQQHHHRPH AAMGMPSPDY DLAPAAAATP AVAVTAAAPP AFTTNTNAAV DSGCSGLVVL 180 GRSPPPPVFS ASNETAATAS LDCEHGGGGR GGGRRQRRPN RKRKAAAEAE RSRPVRVAAA 240 AAQEESTLCS LLASTAPTTA GGIQIAFSTA AVHQQQHAAG GAGGAKTSAK PSSLSLSSSG 300 SSSNISFDGR NPARNGGGGG GGDPVYEPDT EALAQVKEMI YRAAAMRPVS LGSEDDAGAG 360 AERPPRRRNV RISSDPQTVA ARQRRERISD RLRVLQKLVP GGAKMDTASM LDEAASYLRF 420 LKSQVRDLQT LDRRNYGAAS SNDAAATMAA VVGSSLSYNR GTGAMPAFTF PAAGETLRGA 480 G
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT035033 | 0.0 | BT035033.1 Zea mays full-length cDNA clone ZM_BFb0033F20 mRNA, complete cds. |
GenBank | KJ726857 | 0.0 | KJ726857.1 Zea mays clone pUT3398 bHLH transcription factor (bHLH25) mRNA, partial cds. |