PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G080583_P01
Common NameTHX17
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Trihelix
Protein Properties Length: 318aa    MW: 34724.1 Da    PI: 10.0667
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G080583_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix431.2e-1318104186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                        +W++ e+ aL++a  ++  +l+rg+l++p+W+ev++++       ++r   r+ +qCk++ + l+k+yk+++++ +       s++ ++ ql
  GRMZM2G080583_P01  18 CWSEGETAALVDAWGSRYLDLNRGSLRQPQWREVADAVnsrpgasARRRPPRTDIQCKNRVDTLKKKYKAERARGGP------SQWNFYAQL 103
                        7*******************************************999999*********************999886......589999998 PP

           trihelix  86 e 86 
                        +
  GRMZM2G080583_P01 104 D 104
                        6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.7E-2516104No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MDGKLPPPNP NLPYREDCWS EGETAALVDA WGSRYLDLNR GSLRQPQWRE VADAVNSRPG  60
ASARRRPPRT DIQCKNRVDT LKKKYKAERA RGGPSQWNFY AQLDLLVGPT LTGIKKPSPP  120
RAALPVFRRR LTPPRSPSPQ SPPPLPVALP LHNYRRGSDL PSANLIHKAA AAAAAAAAES  180
DSEDGYNNND YDDDEGSQQS PSRSVSSGFG GGGGGAPPAV GSKRKMSSGS GGFGELARAI  240
ETFADMYERM EAAKQQHAEE MERQRIKFLK DLELKRMQAF VDMQLQLART KHARKGDASS  300
DTLMSLAALP FLSSPAYL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.7680.0aerial organ| cell lignification| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G080583
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G080583_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278550.0KJ727855.1 Zea mays clone pUT5900 trihelix transcription factor (THX17) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008675215.10.0trihelix transcription factor ASIL2
SwissprotQ9LJG81e-31ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A060CXU70.0A0A060CXU7_MAIZE; Sequence-specific DNA binding transcription factor (Fragment)
STRINGGRMZM2G080583_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.11e-29sequence-specific DNA binding transcription factors