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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
GRMZM2G080295_P01 |
| Common Name | LOC103647615 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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| Family |
SRS |
| Protein Properties |
Length: 324aa MW: 33081.8 Da PI: 9.1531 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GRMZM2G080295_P01 | genome | MaizeSequence | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 218.6 | 1.4e-67 | 95 | 246 | 3 | 153 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.kskkqsalsstklss 93
g++sCqdCGnqakkdC+h+RCRtCCksrgf C+thvkstWv+aakrrerqqqlaa++++a +aa+a + r+ ++ ++ s ++ t++ss
GRMZM2G080295_P01 95 GGGVSCQDCGNQAKKDCVHQRCRTCCKSRGFACSTHVKSTWVSAAKRRERQQQLAALAASAGDTAAAAGPSRDPTKrPRARLSVATPTTTSS 186
5789*****************************************************99999888666555544441444556667788899 PP
DUF702 94 aeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
+++++ + ++++P+evssea+frcvr++ vd +e+e+aYqt+vsigGhvfkGiL+d G+
GRMZM2G080295_P01 187 GDQQMVTVAERFPREVSSEALFRCVRLGPVDRAEAEVAYQTTVSIGGHVFKGILHDVGPR 246
99999999**************************************************96 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 324 aa
Download sequence Send
to blast |
MAGFPLGGGS HTQSRDAPAS SVPPVHPSDA ASFLYAARAG AGLQLWQQQQ QHPFYNSNII 60
RFSDDPPGAA PSLTGAASPS SPSRGPRAGG GSGGGGGVSC QDCGNQAKKD CVHQRCRTCC 120
KSRGFACSTH VKSTWVSAAK RRERQQQLAA LAASAGDTAA AAGPSRDPTK RPRARLSVAT 180
PTTTSSGDQQ MVTVAERFPR EVSSEALFRC VRLGPVDRAE AEVAYQTTVS IGGHVFKGIL 240
HDVGPRSLPA AGGGAAAAAI EYYFRHAADG SPPSTTGAAG EACGAGGVGN VVVSSAVVMD 300
PYPTPGPYTA FLPGAPFFPG HPRQ
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in the apical parts of the developing gynoecium. Detected throughout the youngest flower primordium. Later relocalizes towards the regions of the presumptive sepal anlagen and remains in sepal primordia until just after their emergence. Also observed on the abaxial side of the young floral meristem. Present in the newly arisen gynoecial primordium. Restricted to the apical parts of the carpels as the open-ended gynoecial cylinder elongates vertically. In the apical regions of the gynoecium, confined to a zone in the interphase between the style and the stigma and fades out later. Within the gynoecium, accumulates in ovule primordia, and, as the ovules developed, restricted to the epidermis of the developing funiculi, to the outer, but not the inner, integuments and to the tip of the nucellus. Also present in the cell layer of the septum that faces the ovary. In the embryo, detected in the cotyledon primordia during late globular to mid heart stage. In addition, transiently expressed in petal and stamen primordia and in the tapetum of the anthers. {ECO:0000269|PubMed:12361963}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in flowers, seeds and seedlings. {ECO:0000269|PubMed:12361963}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT033411 | 0.0 | BT033411.1 Zea mays full-length cDNA clone ZM_BFb0154O01 mRNA, complete cds. |
| GenBank | BT087618 | 0.0 | BT087618.1 Zea mays full-length cDNA clone ZM_BFb0133L22 mRNA, complete cds. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G51060.1 | 4e-38 | Lateral root primordium (LRP) protein-related |
