PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G079653_P01
Common NameEREB138, LOC100283213, Zm.53309
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 211aa    MW: 22154.9 Da    PI: 7.8802
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G079653_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.8e-191867255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       +++GVr ++ +gr++AeIrdp    k++r++lg+f++ae+Aa+a++aa++ l+g
  GRMZM2G079653_P01 18 RFRGVRKRP-WGRYAAEIRDPA---KKARVWLGTFDSAEDAARAYDAAARMLRG 67
                       59*******.**********83...36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.0E-361881IPR001471AP2/ERF domain
PROSITE profilePS5103223.4061875IPR001471AP2/ERF domain
PfamPF008475.3E-131867IPR001471AP2/ERF domain
CDDcd000185.37E-171874No hitNo description
PRINTSPR003673.2E-101930IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-221976IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-311975IPR001471AP2/ERF domain
PRINTSPR003673.2E-104157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MRRRGVAAAE ADGDVELRFR GVRKRPWGRY AAEIRDPAKK ARVWLGTFDS AEDAARAYDA  60
AARMLRGPKA RTNFPLPAAA ALHHHHMPAA AAAAAPPYTT YPTATGVSTP PVARPACSSL  120
SSTVESFSGA RPRPVLPPRF PPPSIPDGDC RSDCGSSASV VDDDCTDAAA SASCPFPLPF  180
DLNLPPGSGG GAGVGFYADE EDELRLTALR L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-211976664ATERF1
3gcc_A3e-211976664ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.533090.0cell culture| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G079653
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00194DAPTransfer from AT1G50640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G079653_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282060.0KJ728206.1 Zea mays clone pUT6482 AP2-EREBP transcription factor (EREB138) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149587.21e-147uncharacterized protein LOC100283213
SwissprotO803397e-38ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A060D2G61e-146A0A060D2G6_MAIZE; AP2-EREBP transcription factor (Fragment)
STRINGGRMZM2G079653_P011e-147(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51232758
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.11e-21ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]