PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

LBD

Protein Properties

Length: 199aa MW: 20689.5 Da PI: 7.8397

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G079185_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.4	5.9e-44	28	127	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrr+Ca++Cv+apyfp +p+kfanvhk+FGasnv+kll+++p ++r da+sslvyeA+ar+rdPvyG+vg i++lq+q+e l+a GRMZM2G079185_P01 28 PCAACKLLRRRCAAGCVFAPYFPPGEPHKFANVHKVFGASNVSKLLQEIPAQHRGDAVSSLVYEANARVRDPVYGCVGAISSLQEQVEALQA 119 7***************************************************************************************** PP DUF260 93 elallkee 100 +lal+++e GRMZM2G079185_P01 120 QLALAQAE 127 **9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.869	27	128	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-43	28	125	IPR004883	Lateral organ boundaries, LOB

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0006339	anatomy	juvenile vascular leaf
PO:0009025	anatomy	vascular leaf
PO:0001052	developmental stage	vascular leaf expansion stage
PO:0001053	developmental stage	vascular leaf post-expansion stage
PO:0007106	developmental stage	LP.03 three leaves visible stage

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MRDAVVVMAV PGGGGGGGGS ASSAAAAPCA ACKLLRRRCA AGCVFAPYFP PGEPHKFANV 60 HKVFGASNVS KLLQEIPAQH RGDAVSSLVY EANARVRDPV YGCVGAISSL QEQVEALQAQ 120 LALAQAEMVR LRMTNDYIVH RLKAASRAGG GGSSYAGSPS SMSSPKTAEP EAHCKATPEL 180 LDMVVDQPGM DDAHFWSSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-51	22	130	5	113	LOB family transfactor Ramosa2.1
5ly0_B	8e-51	22	130	5	113	LOB family transfactor Ramosa2.1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.29957	0.0	tassel

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G079185

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G079185_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT069911	0.0	BT069911.1 Zea mays full-length cDNA clone ZM_BFb0321D10 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001170378.1	1e-144	uncharacterized protein LOC100384360
Swissprot	Q8LBW3	2e-56	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A1D6GL54	1e-143	A0A1D6GL54_MAIZE; LOB domain-containing protein 4
STRING	GRMZM2G079185_P01	1e-144	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	2e-36	LOB domain-containing protein 4

Link Out ? help Back to Top
Phytozome	GRMZM2G079185_P01

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]