PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

MYB

Protein Properties

Length: 258aa MW: 27930.6 Da PI: 9.0354

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G077789_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.3	1.7e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+lv +v+ +G g+W++ ++ g+ R++k+c++rw +yl GRMZM2G077789_P01 14 KGAWTKEEDERLVAYVRAHGEGCWRSLPKAAGLLRCGKSCRLRWMNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	55.6	1.2e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T +Edel+++++ +lG++ W++Ia ++ gRt++++k++w+++ GRMZM2G077789_P01 67 RGNFTDDEDELIIRLHSLLGNK-WSLIAGQLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.2E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.782	9	61	IPR017930	Myb domain
SMART	SM00717	4.2E-14	13	63	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	8.99E-30	13	108	IPR009057	Homeodomain-like
Pfam	PF00249	4.0E-16	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	2.88E-11	16	61	No hit	No description
PROSITE profile	PS51294	28.1	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.5E-28	65	116	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	9.7E-16	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	4.10E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDERLVAYVR AHGEGCWRSL PKAAGLLRCG KSCRLRWMNY 60 LRPDLKRGNF TDDEDELIIR LHSLLGNKWS LIAGQLPGRT DNEIKNYWNT HIKRKLLARG 120 IDPKTHRPLG AGADAAAPPG VVAHRALLHR AGAAPVELAV KPAPAESSDD GGRSSASASS 180 GGGASVEEPR CPDLNLDLSV GPPAAADTPT SQSQLAVCLC YRLGLRAGEA CSCQAQADNA 240 GQQRFRFSDF RTERRVVK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-29	14	116	7	108	B-MYB
1h8a_C	7e-29	13	116	26	128	MYB TRANSFORMING PROTEIN
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Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G077789

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269\|PubMed:1840903}.
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269\|PubMed:1840903}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G077789_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF372521	0.0	EF372521.1 Saccharum officinarum MYB protein mRNA, complete cds.
GenBank	HF679428	0.0	HF679428.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB22 protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001344512.1	0.0	uncharacterized protein LOC100384757 isoform 1
Swissprot	P81393	2e-97	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A1D6M5K3	0.0	A0A1D6M5K3_MAIZE; Transcription repressor MYB6
STRING	GRMZM2G077789_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	6e-89	myb domain protein 4

Link Out ? help Back to Top
Phytozome	GRMZM2G077789_P01

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]