PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G076657_P01
Common Namepco138672
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 494aa    MW: 52528.7 Da    PI: 7.0697
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G076657_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.69.4e-32228284259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        dDgynWrKYGqK+vkgs++prsYY+Ct+++Cpvkkkve+++ d+++ ei+Y+g+Hnh+
  GRMZM2G076657_P01 228 DDGYNWRKYGQKVVKGSDCPRSYYKCTHPNCPVKKKVEHAE-DGQISEIIYKGKHNHQ 284
                        8**************************************99.***************8 PP
2WRKY104.84.5e-33384442159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+ +prsYY+Ct+agC+v+k++er+++dp++v++tYeg+H+he
  GRMZM2G076657_P01 384 LDDGYRWRKYGQKVVKGNSHPRSYYKCTFAGCNVRKHIERASSDPRAVITTYEGKHDHE 442
                        59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-28224286IPR003657WRKY domain
SuperFamilySSF1182902.48E-25226286IPR003657WRKY domain
SMARTSM007742.5E-34227285IPR003657WRKY domain
PROSITE profilePS5081123.192228286IPR003657WRKY domain
PfamPF031061.5E-24228284IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-35370444IPR003657WRKY domain
SuperFamilySSF1182901.7E-28376444IPR003657WRKY domain
PROSITE profilePS5081135.783379444IPR003657WRKY domain
SMARTSM007743.7E-38384443IPR003657WRKY domain
PfamPF031064.7E-25385441IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MSARPPPPPR PRLALPPRST AESLFTGAGD ASPGPLTLAS ALFPSDADGG GGPGGASSSA  60
AGAATFTQLL TGSLAPPPQQ QQHEAQTGGG GVARAGPALS VAPPASSFAG ASLFTVPPGL  120
SPSGLLDSPG LLFSPAMGGF GMSHQQALAQ VTAQATHSPL RMFDHLEQPS FSTAATTSGA  180
LHHMNSAASM AGISDMTMAT ANNENPSFQS AEASQRYQVN APVDKPADDG YNWRKYGQKV  240
VKGSDCPRSY YKCTHPNCPV KKKVEHAEDG QISEIIYKGK HNHQRPPNKR AKDGNSSAFD  300
QNEQSNDTTS GLSGAKRDQD NIYGMSEQAY GLSDGDDMDD GESRPHEVDD ADNESKRRNI  360
QISSQRTLSE SKIIVQTTSE VDLLDDGYRW RKYGQKVVKG NSHPRSYYKC TFAGCNVRKH  420
IERASSDPRA VITTYEGKHD HEPPVGRGNN QNAGIPQQKE GQNNISSNQA SLSRPDFSNA  480
NQMPIGILQF KSEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36218444877Probable WRKY transcription factor 4
2lex_A2e-36218444877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G076657
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G076657_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9577400.0EU957740.1 Zea mays clone 1613457 SPF1-like DNA-binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147897.20.0uncharacterized protein LOC100281507
TrEMBLB6SYC50.0B6SYC5_MAIZE; SPF1-like DNA-binding protein
STRINGGRMZM2G076657_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-92WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]